FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3212, 479 aa 1>>>pF1KE3212 479 - 479 aa - 479 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.3666+/-0.000286; mu= 15.3487+/- 0.018 mean_var=118.8002+/-24.493, 0's: 0 Z-trim(121.3): 394 B-trim: 2377 in 2/54 Lambda= 0.117670 statistics sampled from 37315 (37720) to 37315 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.442), width: 16 Scan time: 10.380 The best scores are: opt bits E(85289) XP_005251974 (OMIM: 602778) PREDICTED: nuclear rec ( 479) 3309 572.3 1e-162 NP_201591 (OMIM: 602778) nuclear receptor subfamil ( 480) 3297 570.2 4.3e-162 NP_001480 (OMIM: 602778) nuclear receptor subfamil ( 475) 3265 564.8 1.8e-160 NP_001265475 (OMIM: 602778) nuclear receptor subfa ( 476) 3253 562.8 7.5e-160 XP_005251975 (OMIM: 602778) PREDICTED: nuclear rec ( 438) 2943 510.1 4.9e-144 NP_001263393 (OMIM: 604453) nuclear receptor subfa ( 469) 407 79.6 2.1e-14 XP_005245119 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 407 79.6 2.1e-14 XP_011507684 (OMIM: 604453) PREDICTED: nuclear rec ( 469) 407 79.6 2.1e-14 NP_003813 (OMIM: 604453) nuclear receptor subfamil ( 495) 407 79.6 2.1e-14 XP_011507682 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 407 79.7 2.2e-14 XP_011507683 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 407 79.7 2.2e-14 XP_016856393 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 407 79.7 2.2e-14 XP_011507686 (OMIM: 604453) PREDICTED: nuclear rec ( 501) 407 79.7 2.2e-14 NP_995582 (OMIM: 604453) nuclear receptor subfamil ( 541) 407 79.7 2.3e-14 NP_001036193 (OMIM: 180190) retinoic acid receptor ( 443) 403 78.9 3.1e-14 XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 399 78.2 4.8e-14 NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 396 77.7 6e-14 XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 396 77.7 6.8e-14 XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 396 77.7 7.2e-14 NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 396 77.8 8.2e-14 NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 396 77.8 8.3e-14 NP_008848 (OMIM: 180247) retinoic acid receptor RX ( 463) 392 77.1 1.2e-13 NP_001277145 (OMIM: 180220,615524) retinoic acid r ( 455) 388 76.4 1.9e-13 NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 386 76.0 2e-13 NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 386 76.0 2.3e-13 NP_000957 (OMIM: 180190) retinoic acid receptor ga ( 454) 386 76.1 2.4e-13 NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 386 76.1 2.4e-13 NP_001230659 (OMIM: 180190) retinoic acid receptor ( 382) 382 75.3 3.3e-13 NP_008845 (OMIM: 601972) nuclear receptor ROR-beta ( 459) 382 75.4 3.8e-13 NP_775291 (OMIM: 600542,612237) nuclear receptor s ( 443) 381 75.2 4.2e-13 NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 379 74.8 4.4e-13 NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 379 74.8 4.4e-13 XP_005257609 (OMIM: 180240,612376) PREDICTED: reti ( 478) 381 75.2 4.4e-13 XP_016870651 (OMIM: 600542,612237) PREDICTED: nucl ( 626) 381 75.3 5.4e-13 NP_008912 (OMIM: 600542,612237) nuclear receptor s ( 626) 381 75.3 5.4e-13 NP_775292 (OMIM: 600542,612237) nuclear receptor s ( 637) 381 75.3 5.5e-13 XP_005257610 (OMIM: 180240,612376) PREDICTED: reti ( 462) 378 74.7 6.2e-13 XP_011523397 (OMIM: 180240,612376) PREDICTED: reti ( 462) 378 74.7 6.2e-13 NP_001138773 (OMIM: 180240,612376) retinoic acid r ( 462) 378 74.7 6.2e-13 NP_000955 (OMIM: 180240,612376) retinoic acid rece ( 462) 378 74.7 6.2e-13 XP_005257611 (OMIM: 180240,612376) PREDICTED: reti ( 462) 378 74.7 6.2e-13 XP_006711547 (OMIM: 602943,616622) PREDICTED: nucl ( 651) 380 75.2 6.3e-13 NP_004950 (OMIM: 184757,612964,612965,613957) ster ( 461) 375 74.2 8.8e-13 XP_005251928 (OMIM: 184757,612964,612965,613957) P ( 461) 375 74.2 8.8e-13 XP_011516757 (OMIM: 184757,612964,612965,613957) P ( 461) 375 74.2 8.8e-13 NP_001277229 (OMIM: 180220,615524) retinoic acid r ( 405) 374 74.0 8.9e-13 NP_001277195 (OMIM: 180220,615524) retinoic acid r ( 399) 372 73.6 1.1e-12 NP_001277206 (OMIM: 180220,615524) retinoic acid r ( 402) 372 73.6 1.1e-12 NP_000956 (OMIM: 180220,615524) retinoic acid rece ( 448) 372 73.7 1.2e-12 XP_011523398 (OMIM: 180240,612376) PREDICTED: reti ( 404) 371 73.5 1.3e-12 >>XP_005251974 (OMIM: 602778) PREDICTED: nuclear recepto (479 aa) initn: 3309 init1: 3309 opt: 3309 Z-score: 3042.1 bits: 572.3 E(85289): 1e-162 Smith-Waterman score: 3309; 100.0% identity (100.0% similar) in 479 aa overlap (1-479:1-479) 10 20 30 40 50 60 pF1KE3 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 GNRASESNQPSPGSTLSSRSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GNRASESNQPSPGSTLSSRSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLPQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 QARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIAW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 IKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHRF 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 SDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYI 370 380 390 400 410 420 430 440 450 460 470 pF1KE3 CQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE 430 440 450 460 470 >>NP_201591 (OMIM: 602778) nuclear receptor subfamily 6 (480 aa) initn: 1901 init1: 1901 opt: 3297 Z-score: 3031.1 bits: 570.2 E(85289): 4.3e-162 Smith-Waterman score: 3297; 99.8% identity (99.8% similar) in 480 aa overlap (1-479:1-480) 10 20 30 40 50 60 pF1KE3 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP 130 140 150 160 170 180 190 200 210 220 230 pF1KE3 GNRASESNQPSPGSTLSS-RSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLP :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: NP_201 GNRASESNQPSPGSTLSSSRSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLP 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE3 QQARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 QQARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIA 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE3 WIKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 WIKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHR 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE3 FSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 FSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWY 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE3 ICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_201 ICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE 430 440 450 460 470 480 >>NP_001480 (OMIM: 602778) nuclear receptor subfamily 6 (475 aa) initn: 2932 init1: 2932 opt: 3265 Z-score: 3001.8 bits: 564.8 E(85289): 1.8e-160 Smith-Waterman score: 3265; 99.0% identity (99.2% similar) in 479 aa overlap (1-479:1-475) 10 20 30 40 50 60 pF1KE3 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTC ::::::::::::::::::::::::::::::::::::::::::::::: .:::::::: NP_001 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGT----NDRAEQRTC 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 GNRASESNQPSPGSTLSSRSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GNRASESNQPSPGSTLSSRSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLPQ 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 QARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIAW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIAW 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE3 IKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHRF 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE3 SDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYI 360 370 380 390 400 410 430 440 450 460 470 pF1KE3 CQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE 420 430 440 450 460 470 >>NP_001265475 (OMIM: 602778) nuclear receptor subfamily (476 aa) initn: 2244 init1: 1901 opt: 3253 Z-score: 2990.8 bits: 562.8 E(85289): 7.5e-160 Smith-Waterman score: 3253; 98.8% identity (99.0% similar) in 480 aa overlap (1-479:1-476) 10 20 30 40 50 60 pF1KE3 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTC ::::::::::::::::::::::::::::::::::::::::::::::: .:::::::: NP_001 MERDEPPPSGGGGGGGSAGFLEPPAALPPPPRNGFCQDELAELDPGT----NDRAEQRTC 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LICGDRATGLHYGIISCEGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKC 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LQMGMNRKAIREDGMPGGRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSP 120 130 140 150 160 170 190 200 210 220 230 pF1KE3 GNRASESNQPSPGSTLSS-RSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLP :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: NP_001 GNRASESNQPSPGSTLSSSRSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLP 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE3 QQARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QQARSLDPQSYSLIHQLLSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIA 240 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 WIKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 WIKKLPFFCELSIKDYTCLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHR 300 310 320 330 340 350 360 370 380 390 400 410 pF1KE3 FSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWY 360 370 380 390 400 410 420 430 440 450 460 470 pF1KE3 ICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE 420 430 440 450 460 470 >>XP_005251975 (OMIM: 602778) PREDICTED: nuclear recepto (438 aa) initn: 1901 init1: 1901 opt: 2943 Z-score: 2706.9 bits: 510.1 E(85289): 4.9e-144 Smith-Waterman score: 2943; 99.5% identity (99.8% similar) in 433 aa overlap (48-479:6-438) 20 30 40 50 60 70 pF1KE3 AGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGLHYGIISC .::::::::::::::::::::::::::::: XP_005 METWEVSVSDDRAEQRTCLICGDRATGLHYGIISC 10 20 30 80 90 100 110 120 130 pF1KE3 EGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPG 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 GRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPGSTLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 GRNKSIGPVQISEEEIERIMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPGSTLS 100 110 120 130 140 150 200 210 220 230 240 250 pF1KE3 S-RSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLPQQARSLDPQSYSLIHQL : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SSRSVELNGFMAFREQYMGMSVPPHYQYIPHLFSYSGHSPLLPQQARSLDPQSYSLIHQL 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE3 LSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIAWIKKLPFFCELSIKDYT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LSAEDLEPLGTPMLIEDGYAVTQAELFALLCRLADELLFRQIAWIKKLPFFCELSIKDYT 220 230 240 250 260 270 320 330 340 350 360 370 pF1KE3 CLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 CLLSSTWQELILLSSLTVYSKQIFGELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYH 280 290 300 310 320 330 380 390 400 410 420 430 pF1KE3 KFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KFHQLKVSNEEYACMKAINFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRF 340 350 360 370 380 390 440 450 460 470 pF1KE3 PDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE ::::::::::::::::::::::::::::::::::::::::::: XP_005 PDLMMCLPEIRYIAGKMVNVPLEQLPLLFKVVLHSCKTSVGKE 400 410 420 430 >>NP_001263393 (OMIM: 604453) nuclear receptor subfamily (469 aa) initn: 528 init1: 372 opt: 407 Z-score: 379.8 bits: 79.6 E(85289): 2.1e-14 Smith-Waterman score: 623; 27.7% identity (59.5% similar) in 447 aa overlap (48-450:2-438) 20 30 40 50 60 70 pF1KE3 AGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGLHYGIISC .. : :. .. : .:::...: :::...: NP_001 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTC 10 20 30 80 90 100 110 120 130 pF1KE3 EGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPG :.:::::::.. :.. : : ...:: ... ::.:: :::. :::..::. .:.: : : : NP_001 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 GRNKSIGPVQISEEEIER----IMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPG :::: .::. .. ... .. .. .. :: .. . . .. .. .. : : NP_001 GRNK-FGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKG 100 110 120 130 140 150 200 210 220 230 pF1KE3 STLSSRSVELNGF--MAFREQYMGMSVPPH-----YQYIPHLFSYS-------------- :. .. . . : . ..:..::: :: :. : . NP_001 LPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPE 160 170 180 190 200 210 240 250 260 270 280 pF1KE3 ---GHSPLLPQQARSLDPQSYS-LIHQLLSAEDLEPLGTPMLI-----EDGYAVTQAEL- :.: . :. : : : :: .::. : :: .. :.. . .: NP_001 SIMGYSYMDSYQTSS--PASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS 220 230 240 250 260 290 300 310 320 330 pF1KE3 -FALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLSSL---TVYSKQ :.:.:..::. :: . : .. :: ::.. : ::.. :.::..:. . .:..:. NP_001 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE 270 280 290 300 310 320 340 350 360 370 380 390 pF1KE3 --IF---GELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKA :: :. .: . : . :. . ....:.. .: ..:. ...:..:.: NP_001 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL-------RSLQFDQREFVCLKF 330 340 350 360 370 380 400 410 420 430 440 450 pF1KE3 INFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKM . ... :...: . . .: .... :.: .: .: ..: .:.. ::::: :. NP_001 LVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQA 390 400 410 420 430 440 460 470 pF1KE3 VNVPLEQLPLLFKVVLHSCKTSVGKE NP_001 EEYLYYKHLNGDVPYNNLLIEMLHAKRA 450 460 >>XP_005245119 (OMIM: 604453) PREDICTED: nuclear recepto (469 aa) initn: 528 init1: 372 opt: 407 Z-score: 379.8 bits: 79.6 E(85289): 2.1e-14 Smith-Waterman score: 623; 27.7% identity (59.5% similar) in 447 aa overlap (48-450:2-438) 20 30 40 50 60 70 pF1KE3 AGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGLHYGIISC .. : :. .. : .:::...: :::...: XP_005 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTC 10 20 30 80 90 100 110 120 130 pF1KE3 EGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPG :.:::::::.. :.. : : ...:: ... ::.:: :::. :::..::. .:.: : : : XP_005 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 GRNKSIGPVQISEEEIER----IMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPG :::: .::. .. ... .. .. .. :: .. . . .. .. .. : : XP_005 GRNK-FGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKG 100 110 120 130 140 150 200 210 220 230 pF1KE3 STLSSRSVELNGF--MAFREQYMGMSVPPH-----YQYIPHLFSYS-------------- :. .. . . : . ..:..::: :: :. : . XP_005 LPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPE 160 170 180 190 200 210 240 250 260 270 280 pF1KE3 ---GHSPLLPQQARSLDPQSYS-LIHQLLSAEDLEPLGTPMLI-----EDGYAVTQAEL- :.: . :. : : : :: .::. : :: .. :.. . .: XP_005 SIMGYSYMDSYQTSS--PASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS 220 230 240 250 260 290 300 310 320 330 pF1KE3 -FALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLSSL---TVYSKQ :.:.:..::. :: . : .. :: ::.. : ::.. :.::..:. . .:..:. XP_005 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE 270 280 290 300 310 320 340 350 360 370 380 390 pF1KE3 --IF---GELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKA :: :. .: . : . :. . ....:.. .: ..:. ...:..:.: XP_005 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL-------RSLQFDQREFVCLKF 330 340 350 360 370 380 400 410 420 430 440 450 pF1KE3 INFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKM . ... :...: . . .: .... :.: .: .: ..: .:.. ::::: :. XP_005 LVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQA 390 400 410 420 430 440 460 470 pF1KE3 VNVPLEQLPLLFKVVLHSCKTSVGKE XP_005 EEYLYYKHLNGDVPYNNLLIEMLHAKRA 450 460 >>XP_011507684 (OMIM: 604453) PREDICTED: nuclear recepto (469 aa) initn: 528 init1: 372 opt: 407 Z-score: 379.8 bits: 79.6 E(85289): 2.1e-14 Smith-Waterman score: 623; 27.7% identity (59.5% similar) in 447 aa overlap (48-450:2-438) 20 30 40 50 60 70 pF1KE3 AGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGLHYGIISC .. : :. .. : .:::...: :::...: XP_011 MVNYSYDEDLEELCPVCGDKVSGYHYGLLTC 10 20 30 80 90 100 110 120 130 pF1KE3 EGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPG :.:::::::.. :.. : : ...:: ... ::.:: :::. :::..::. .:.: : : : XP_011 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG 40 50 60 70 80 90 140 150 160 170 180 190 pF1KE3 GRNKSIGPVQISEEEIER----IMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPG :::: .::. .. ... .. .. .. :: .. . . .. .. .. : : XP_011 GRNK-FGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKG 100 110 120 130 140 150 200 210 220 230 pF1KE3 STLSSRSVELNGF--MAFREQYMGMSVPPH-----YQYIPHLFSYS-------------- :. .. . . : . ..:..::: :: :. : . XP_011 LPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPE 160 170 180 190 200 210 240 250 260 270 280 pF1KE3 ---GHSPLLPQQARSLDPQSYS-LIHQLLSAEDLEPLGTPMLI-----EDGYAVTQAEL- :.: . :. : : : :: .::. : :: .. :.. . .: XP_011 SIMGYSYMDSYQTSS--PASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS 220 230 240 250 260 290 300 310 320 330 pF1KE3 -FALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLSSL---TVYSKQ :.:.:..::. :: . : .. :: ::.. : ::.. :.::..:. . .:..:. XP_011 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE 270 280 290 300 310 320 340 350 360 370 380 390 pF1KE3 --IF---GELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKA :: :. .: . : . :. . ....:.. .: ..:. ...:..:.: XP_011 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL-------RSLQFDQREFVCLKF 330 340 350 360 370 380 400 410 420 430 440 450 pF1KE3 INFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKM . ... :...: . . .: .... :.: .: .: ..: .:.. ::::: :. XP_011 LVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQA 390 400 410 420 430 440 460 470 pF1KE3 VNVPLEQLPLLFKVVLHSCKTSVGKE XP_011 EEYLYYKHLNGDVPYNNLLIEMLHAKRA 450 460 >>NP_003813 (OMIM: 604453) nuclear receptor subfamily 5 (495 aa) initn: 528 init1: 372 opt: 407 Z-score: 379.4 bits: 79.6 E(85289): 2.1e-14 Smith-Waterman score: 623; 27.7% identity (59.5% similar) in 447 aa overlap (48-450:28-464) 20 30 40 50 60 70 pF1KE3 AGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGLHYGIISC .. : :. .. : .:::...: :::...: NP_003 MSSNSDTGDLQESLKHGLTPIVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTC 10 20 30 40 50 80 90 100 110 120 130 pF1KE3 EGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPG :.:::::::.. :.. : : ...:: ... ::.:: :::. :::..::. .:.: : : : NP_003 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG 60 70 80 90 100 110 140 150 160 170 180 190 pF1KE3 GRNKSIGPVQISEEEIER----IMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPG :::: .::. .. ... .. .. .. :: .. . . .. .. .. : : NP_003 GRNK-FGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKG 120 130 140 150 160 170 200 210 220 230 pF1KE3 STLSSRSVELNGF--MAFREQYMGMSVPPH-----YQYIPHLFSYS-------------- :. .. . . : . ..:..::: :: :. : . NP_003 LPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPE 180 190 200 210 220 230 240 250 260 270 280 pF1KE3 ---GHSPLLPQQARSLDPQSYS-LIHQLLSAEDLEPLGTPMLI-----EDGYAVTQAEL- :.: . :. : : : :: .::. : :: .. :.. . .: NP_003 SIMGYSYMDSYQTSS--PASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS 240 250 260 270 280 290 290 300 310 320 330 pF1KE3 -FALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLSSL---TVYSKQ :.:.:..::. :: . : .. :: ::.. : ::.. :.::..:. . .:..:. NP_003 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE 300 310 320 330 340 350 340 350 360 370 380 390 pF1KE3 --IF---GELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKA :: :. .: . : . :. . ....:.. .: ..:. ...:..:.: NP_003 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL-------RSLQFDQREFVCLKF 360 370 380 390 400 400 410 420 430 440 450 pF1KE3 INFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKM . ... :...: . . .: .... :.: .: .: ..: .:.. ::::: :. NP_003 LVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQA 410 420 430 440 450 460 460 470 pF1KE3 VNVPLEQLPLLFKVVLHSCKTSVGKE NP_003 EEYLYYKHLNGDVPYNNLLIEMLHAKRA 470 480 490 >>XP_011507682 (OMIM: 604453) PREDICTED: nuclear recepto (501 aa) initn: 528 init1: 372 opt: 407 Z-score: 379.4 bits: 79.7 E(85289): 2.2e-14 Smith-Waterman score: 623; 27.7% identity (59.5% similar) in 447 aa overlap (48-450:34-470) 20 30 40 50 60 70 pF1KE3 AGFLEPPAALPPPPRNGFCQDELAELDPGTISVSDDRAEQRTCLICGDRATGLHYGIISC .. : :. .. : .:::...: :::...: XP_011 KVETEALGLARSHGEQGQMPENMQVSQFKMVNYSYDEDLEELCPVCGDKVSGYHYGLLTC 10 20 30 40 50 60 80 90 100 110 120 130 pF1KE3 EGCKGFFKRSICNKRVYRCSRDKNCVMSRKQRNRCQYCRLLKCLQMGMNRKAIREDGMPG :.:::::::.. :.. : : ...:: ... ::.:: :::. :::..::. .:.: : : : XP_011 ESCKGFFKRTVQNNKRYTCIENQNCQIDKTQRKRCPYCRFQKCLSVGMKLEAVRADRMRG 70 80 90 100 110 120 140 150 160 170 180 190 pF1KE3 GRNKSIGPVQISEEEIER----IMSGQEFEEEANHWSNHGDSDHSSPGNRASESNQPSPG :::: .::. .. ... .. .. .. :: .. . . .. .. .. : : XP_011 GRNK-FGPMYKRDRALKQQKKALIRANGLKLEAMSQVIQAMPSDLTISSAIQNIHSASKG 130 140 150 160 170 180 200 210 220 230 pF1KE3 STLSSRSVELNGF--MAFREQYMGMSVPPH-----YQYIPHLFSYS-------------- :. .. . . : . ..:..::: :: :. : . XP_011 LPLNHAALPPTDYDRSPFVTSPISMTMPPHGSLQGYQTYGHFPSRAIKSEYPDPYTSSPE 190 200 210 220 230 240 240 250 260 270 280 pF1KE3 ---GHSPLLPQQARSLDPQSYS-LIHQLLSAEDLEPLGTPMLI-----EDGYAVTQAEL- :.: . :. : : : :: .::. : :: .. :.. . .: XP_011 SIMGYSYMDSYQTSS--PASIPHLILELLKCEPDEPQVQAKIMAYLQQEQANRSKHEKLS 250 260 270 280 290 300 290 300 310 320 330 pF1KE3 -FALLCRLADELLFRQIAWIKKLPFFCELSIKDYTCLLSSTWQELILLSSL---TVYSKQ :.:.:..::. :: . : .. :: ::.. : ::.. :.::..:. . .:..:. XP_011 TFGLMCKMADQTLFSIVEWARSSIFFRELKVDDQMKLLQNCWSELLILDHIYRQVVHGKE 310 320 330 340 350 360 340 350 360 370 380 390 pF1KE3 --IF---GELADVTAKYSPSDEELHRFSDEGMEVIERLIYLYHKFHQLKVSNEEYACMKA :: :. .: . : . :. . ....:.. .: ..:. ...:..:.: XP_011 GSIFLVTGQQVDYSIIASQAGATLNNLMSHAQELVAKL-------RSLQFDQREFVCLKF 370 380 390 400 410 400 410 420 430 440 450 pF1KE3 INFLNQDIRGLTSASQLEQLNKRYWYICQDFTEYKYTHQPNRFPDLMMCLPEIRYIAGKM . ... :...: . . .: .... :.: .: .: ..: .:.. ::::: :. XP_011 LVLFSLDVKNLENFQLVEGVQEQVNAALLDYTMCNYPQQTEKFGQLLLRLPEIRAISMQA 420 430 440 450 460 470 460 470 pF1KE3 VNVPLEQLPLLFKVVLHSCKTSVGKE XP_011 EEYLYYKHLNGDVPYNNLLIEMLHAKRA 480 490 500 479 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:15:03 2016 done: Mon Nov 7 17:15:05 2016 Total Scan time: 10.380 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]