FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4212, 696 aa 1>>>pF1KE4212 696 - 696 aa - 696 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.6987+/-0.000794; mu= 16.5001+/- 0.048 mean_var=156.3791+/-31.827, 0's: 0 Z-trim(114.3): 44 B-trim: 0 in 0/51 Lambda= 0.102562 statistics sampled from 14855 (14896) to 14855 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.458), width: 16 Scan time: 4.210 The best scores are: opt bits E(32554) CCDS372.2 RNF19B gene_id:127544|Hs108|chr1 ( 732) 4448 670.1 3.2e-192 CCDS72754.1 RNF19B gene_id:127544|Hs108|chr1 ( 731) 4431 667.6 1.8e-191 CCDS44107.1 RNF19B gene_id:127544|Hs108|chr1 ( 587) 3401 515.1 1.2e-145 CCDS6286.1 RNF19A gene_id:25897|Hs108|chr8 ( 838) 2306 353.2 9e-97 >>CCDS372.2 RNF19B gene_id:127544|Hs108|chr1 (732 aa) initn: 4448 init1: 4448 opt: 4448 Z-score: 3564.5 bits: 670.1 E(32554): 3.2e-192 Smith-Waterman score: 4730; 95.1% identity (95.1% similar) in 728 aa overlap (5-696:5-732) 10 20 30 40 50 60 pF1KE4 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA 10 20 30 40 50 60 70 80 pF1KE4 A------------------------------------EPGFDDEEAAEGGGPGAEEVECP : ::::::::::::::::::::::: CCDS37 AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE4 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE4 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE4 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSAYIIKMNDG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSAYIIKMNDG 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE4 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG 310 320 330 340 350 360 330 340 350 360 370 380 pF1KE4 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS 370 380 390 400 410 420 390 400 410 420 430 440 pF1KE4 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS 430 440 450 460 470 480 450 460 470 480 490 500 pF1KE4 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE 490 500 510 520 530 540 510 520 530 540 550 560 pF1KE4 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHY 550 560 570 580 590 600 570 580 590 600 610 620 pF1KE4 QLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEEDPPCRHQSCEQKDCLASKPWDISLAQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 QLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEEDPPCRHQSCEQKDCLASKPWDISLAQP 610 620 630 640 650 660 630 640 650 660 670 680 pF1KE4 ESIRSDLESSDAQSDDVPDITSDECGSPRSHTAACPSTPRAQGAPSPSAHMNLSALAEGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS37 ESIRSDLESSDAQSDDVPDITSDECGSPRSHTAACPSTPRAQGAPSPSAHMNLSALAEGQ 670 680 690 700 710 720 690 pF1KE4 TVLKPEGGEARV :::::::::::: CCDS37 TVLKPEGGEARV 730 >>CCDS72754.1 RNF19B gene_id:127544|Hs108|chr1 (731 aa) initn: 3505 init1: 3051 opt: 4431 Z-score: 3550.9 bits: 667.6 E(32554): 1.8e-191 Smith-Waterman score: 4719; 94.9% identity (94.9% similar) in 729 aa overlap (4-696:4-731) 10 20 30 40 50 60 pF1KE4 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA 10 20 30 40 50 60 70 80 pF1KE4 A------------------------------------EPGFDDEEAAEGGGPGAEEVECP : ::::::::::::::::::::::: CCDS72 AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE4 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE4 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE4 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSAYIIKMNDG :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: CCDS72 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP-DDIKPCPRCSAYIIKMNDG 250 260 270 280 290 270 280 290 300 310 320 pF1KE4 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG 300 310 320 330 340 350 330 340 350 360 370 380 pF1KE4 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS 360 370 380 390 400 410 390 400 410 420 430 440 pF1KE4 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS 420 430 440 450 460 470 450 460 470 480 490 500 pF1KE4 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE 480 490 500 510 520 530 510 520 530 540 550 560 pF1KE4 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHY 540 550 560 570 580 590 570 580 590 600 610 620 pF1KE4 QLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEEDPPCRHQSCEQKDCLASKPWDISLAQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 QLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEEDPPCRHQSCEQKDCLASKPWDISLAQP 600 610 620 630 640 650 630 640 650 660 670 680 pF1KE4 ESIRSDLESSDAQSDDVPDITSDECGSPRSHTAACPSTPRAQGAPSPSAHMNLSALAEGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 ESIRSDLESSDAQSDDVPDITSDECGSPRSHTAACPSTPRAQGAPSPSAHMNLSALAEGQ 660 670 680 690 700 710 690 pF1KE4 TVLKPEGGEARV :::::::::::: CCDS72 TVLKPEGGEARV 720 730 >>CCDS44107.1 RNF19B gene_id:127544|Hs108|chr1 (587 aa) initn: 2475 init1: 2021 opt: 3401 Z-score: 2728.4 bits: 515.1 E(32554): 1.2e-145 Smith-Waterman score: 3689; 93.6% identity (93.6% similar) in 579 aa overlap (4-546:4-581) 10 20 30 40 50 60 pF1KE4 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MGSEKDSESPRSTSLHAAAPDPKCRSGGRRRRLTLHSVFSASARGRRARAKPQAEPPPPA 10 20 30 40 50 60 70 80 pF1KE4 A------------------------------------EPGFDDEEAAEGGGPGAEEVECP : ::::::::::::::::::::::: CCDS44 AQPPPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECP 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE4 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 LCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSERLNPHDIRLLLA 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE4 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 DPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYH 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE4 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPADDIKPCPRCSAYIIKMNDG :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: CCDS44 CKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGP-DDIKPCPRCSAYIIKMNDG 250 260 270 280 290 270 280 290 300 310 320 pF1KE4 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 SCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKILWQLGTLIGAPVG 300 310 320 330 340 350 330 340 350 360 370 380 pF1KE4 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 ISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVTLSVIASPVIAAVS 360 370 380 390 400 410 390 400 410 420 430 440 pF1KE4 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDDGPITVADAWRALKNPS 420 430 440 450 460 470 450 460 470 480 490 500 pF1KE4 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 IGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAALSGGTLSGGILSSGKGKYSRLE 480 490 500 510 520 530 510 520 530 540 550 560 pF1KE4 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRECNNMEIQVDIEAKPSHY :::::::::::::::::::::::::::::::::::::::::: CCDS44 VQADVQKEIFPKDTASLGAISDNASTRAMAGSIISSYNPQDRFSMIHA 540 550 560 570 580 570 580 590 600 610 620 pF1KE4 QLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEEDPPCRHQSCEQKDCLASKPWDISLAQP >>CCDS6286.1 RNF19A gene_id:25897|Hs108|chr8 (838 aa) initn: 1630 init1: 1204 opt: 2306 Z-score: 1850.9 bits: 353.2 E(32554): 9e-97 Smith-Waterman score: 2601; 57.5% identity (77.1% similar) in 708 aa overlap (1-676:38-729) 10 20 pF1KE4 MGSEKDSESPRST-SLHAAAPDPKCRSGGR :::..: .: :. :: :. ... . CCDS62 FISKYNEGLCVNTDPVSILTSILDMSLHRQMGSDRDLQSSASSVSL------PSVKKAPK 10 20 30 40 50 60 30 40 50 60 70 pF1KE4 RRRLTLHSVFSASARGRRARAKPQAEPPPPAAEPG------------FDDEEAAEGGGPG .::... :.: . ..: . .. :. . :. . ....: . CCDS62 KRRISIGSLFRRKKDNKRKSRELNGGVDGIASIESIHSEMCTDKNSIFSTNTSSDNGLTS 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE4 AEE-----VECPLCLVRLPPERAPRLLSCPHRSCRDCLRHYLRLEISESRVPISCPECSE . .::::::.: .: : ...: :::: ::::.:::.::::::: ::::::.: CCDS62 ISKQIGDFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTE 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE4 RLNPHDIRLLLADPPLMHKYEEFMLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTC :.:::::::.:.: ::.:::::::::.:..::::::::::::::::::.:::::::::: CCDS62 RFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTC 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE4 EREGCQTEFCYHCKQIWHPNQTCDMARQQRAQTLRVRTKHTSGLSYGQESGPA-DDIKPC :::: :::::::::::::::::: :::.:::.::.:: ..:..::.:::: : :::::: CCDS62 GREGCGTEFCYHCKQIWHPNQTCDAARQERAQSLRLRTIRSSSISYSQESGAAADDIKPC 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE4 PRCSAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKI :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS62 PRCAAYIIKMNDGSCNHMTCAVCGCEFCWLCMKEISDLHYLSPSGCTFWGKKPWSRKKKI 310 320 330 340 350 360 320 330 340 350 360 370 pF1KE4 LWQLGTLIGAPVGISLIAGIAIPAMVIGIPVYVGRKIHSRYEGRKTSKHKRNLAITGGVT :::::::.::::::.::::::::::.::::::::::::.::::. .:::::::::.:::: CCDS62 LWQLGTLVGAPVGIALIAGIAIPAMIIGIPVYVGRKIHNRYEGKDVSKHKRNLAIAGGVT 370 380 390 400 410 420 380 390 400 410 420 pF1KE4 LSVIASPVIAAVSVGIGVPIMLAYVYGVVPISLCRGGGCGVSTANGKGVKIEFDEDD--- ::::.:::.:::.::::::::::::::::::::::.::::::..:::::.::::... CCDS62 LSVIVSPVVAAVTVGIGVPIMLAYVYGVVPISLCRSGGCGVSAGNGKGVRIEFDDENDIN 430 440 450 460 470 480 430 440 450 460 470 480 pF1KE4 --GPITVADAW---RALKNPSIGESSIEGLTSVLSTSGSPTDGLSVMQGPYSETASFAAL : :..:. .: .::::::.:. :::. ::.::: : ..... ::::: :: CCDS62 VGGTNTAVDTTSVAEARHNPSIGEGSVGGLTGSLSASGSHMDRIGAIRDNLSETASTMAL 490 500 510 520 530 540 490 500 510 520 530 pF1KE4 SGGTLSGGILSSGK-GKYSRLEVQADVQKEIFP----KDTASLGAISDNASTRAMAGSII .:....:.. .:. . ..::::::::::: . . :.:::..::::::.::::::. CCDS62 AGASITGSLSGSAMVNCFNRLEVQADVQKERYSLSGESGTVSLGTVSDNASTKAMAGSIL 550 560 570 580 590 600 540 550 560 570 580 590 pF1KE4 SSYNPQDRECNNMEIQVDIEAKPSHYQLVSGSSTEDSLHVHAQMAENEEEGSGGGGSEED .:: : :.: :.::.:::::.:::... ::::. :. .. .... ::..: : CCDS62 NSYIPLDKEGNSMEVQVDIESKPSKFRHNSGSSSVDD----GSATRSHAGGSSSGLPEGK 610 620 630 640 650 600 610 620 630 640 650 pF1KE4 PPCRHQSCEQKDCLASKPWDISLAQPESIRSDLESSDAQSDDVPDITSDECGSPRSHTAA . : : :: . .: :. ::: . . .:.: .: : . . CCDS62 SSATKWSKEATAGKKSKSGKLRKKGNMKINETREDMDAQLLEQQSTNSSEFEAP-SLSDS 660 670 680 690 700 710 660 670 680 690 pF1KE4 CPSTPRAQGAPSPSAHMNLSALAEGQTVLKPEGGEARV ::. : : :.:.. CCDS62 MPSV-----ADSHSSHFSEFSCSDLESMKTSCSHGSSDYHTRFATVNILPEVENDRLENS 720 730 740 750 760 770 696 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:13:28 2016 done: Mon Nov 7 17:13:28 2016 Total Scan time: 4.210 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]