FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6481, 311 aa 1>>>pF1KB6481 311 - 311 aa - 311 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9227+/-0.000646; mu= 9.5023+/- 0.039 mean_var=129.0043+/-26.420, 0's: 0 Z-trim(115.7): 75 B-trim: 0 in 0/52 Lambda= 0.112920 statistics sampled from 16153 (16237) to 16153 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.499), width: 16 Scan time: 2.970 The best scores are: opt bits E(32554) CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19 ( 311) 2199 368.6 3.4e-102 CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1 ( 304) 720 127.7 1.1e-29 >>CCDS12039.1 RNF126 gene_id:55658|Hs108|chr19 (311 aa) initn: 2199 init1: 2199 opt: 2199 Z-score: 1948.2 bits: 368.6 E(32554): 3.4e-102 Smith-Waterman score: 2199; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311) 10 20 30 40 50 60 pF1KB6 MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGSAPSTAPTDQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGSAPSTAPTDQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB6 SRPPLEHVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPESRRERDHPSRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SRPPLEHVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPESRRERDHPSRH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 RYGARQPRARLTTRRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RYGARQPRARLTTRRATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB6 WGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 WGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB6 RVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSFSSSSSSSSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNPPGLTGVSFSSSSSSSSSS 250 260 270 280 290 300 310 pF1KB6 SPSNENATSNS ::::::::::: CCDS12 SPSNENATSNS 310 >>CCDS72863.1 RNF115 gene_id:27246|Hs108|chr1 (304 aa) initn: 832 init1: 605 opt: 720 Z-score: 646.1 bits: 127.7 E(32554): 1.1e-29 Smith-Waterman score: 875; 47.1% identity (69.0% similar) in 306 aa overlap (10-306:19-296) 10 20 30 40 50 pF1KB6 MAEASPHPGRYFCHCCSVEIVPRLPDYICPRCESGFIEELPEETRSTENGS :.::: :. :. :.::.:::::::::::::. ... .:. CCDS72 MAEASAAGADSGAAVAAHRFFCHFCKGEVSPKLPEYICPRCESGFIEEVTDDSSFLGGGG 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB6 APSTAPTDQSRPPLE-HVDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPES . : : :.:. .: :.: :. : . . .:.: CCDS72 SRIDNTTTTHFAELWGHLDHTMF-------------FQD-FR-PFLSSSPLDQDNRA--- 70 80 90 100 120 130 140 150 160 pF1KB6 RRERDHPSRHRY-GARQPRARLTTR---RATGRHEGVPTLEGIIQQLVNGIITPATIP-S :: : .. . ::: :: : : :...: . :..:::.:.. :... ..:: : CCDS72 -NERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRSPAIEGILQHIFAGFFANSAIPGS 110 120 130 140 150 160 170 180 190 200 210 220 pF1KB6 LGP--W-GVLHSNPMDYAWGANGLDAIITQLLNQFENTGPPPADKEKIQALPTVPVTEEH : : :.::::: ::::: .:::::.::::.:.::::::::::::: .:::: ::.:. CCDS72 PHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGPPPADKEKITSLPTVTVTQEQ 170 180 190 200 210 220 230 240 250 260 270 280 pF1KB6 VGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNP : ::::::::.::.. :.::::::::.::..::::::: ::.::::::::.:.... . CCDS72 VDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQ- 230 240 250 260 270 280 290 300 310 pF1KB6 PGLTGVSFSSSSSSSSSSSPSNENATSNS :.:. .:.:. ::.. CCDS72 --------SQSTEASASNRFSNDSQLHDRWTF 290 300 311 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:05:51 2016 done: Mon Nov 7 17:05:51 2016 Total Scan time: 2.970 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]