FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3042, 182 aa 1>>>pF1KE3042 182 - 182 aa - 182 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2382+/-0.000686; mu= 10.4752+/- 0.042 mean_var=110.2483+/-21.950, 0's: 0 Z-trim(114.0): 18 B-trim: 0 in 0/52 Lambda= 0.122149 statistics sampled from 14589 (14606) to 14589 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.449), width: 16 Scan time: 2.010 The best scores are: opt bits E(32554) CCDS10815.1 CMTM3 gene_id:123920|Hs108|chr16 ( 182) 1227 225.7 1.3e-59 CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14 ( 156) 336 68.6 2.1e-12 >>CCDS10815.1 CMTM3 gene_id:123920|Hs108|chr16 (182 aa) initn: 1227 init1: 1227 opt: 1227 Z-score: 1183.9 bits: 225.7 E(32554): 1.3e-59 Smith-Waterman score: 1227; 100.0% identity (100.0% similar) in 182 aa overlap (1-182:1-182) 10 20 30 40 50 60 pF1KE3 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS10 IAKYSDGASKAAGVFGFFATIVFATDFYLIFNDVAKFLKQGDSADETTAHKTEEENSDSD 130 140 150 160 170 180 pF1KE3 SD :: CCDS10 SD >>CCDS9598.1 CMTM5 gene_id:116173|Hs108|chr14 (156 aa) initn: 204 init1: 204 opt: 336 Z-score: 336.3 bits: 68.6 E(32554): 2.1e-12 Smith-Waterman score: 336; 42.1% identity (73.6% similar) in 140 aa overlap (24-162:17-154) 10 20 30 40 50 60 pF1KE3 MWPPDPDPDPDPEPAGGSRPGPAVPGLRALLPARAFLCSLKGRLLLAESGLSFITFICYV : :... .::: : :: :: .: .:..: :::.. CCDS95 MLSARDRRDRHPEEGVVAELQGFAVDKAFLTSHKGILLETELALTLIIFICFT 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 ASSASAFLTAPLLEFLLALYFLFADAMQLNDKWQGLCWPMMDFLRCVTAALIYFAISITA :: ::...: ::::...: ::: : : .... . :: .::::::.: .:....:..: CCDS95 AS-ISAYMAAALLEFFITLAFLFLYATQYYQRFDRINWPCLDFLRCVSAIIIFLVVSFAA 60 70 80 90 100 110 130 140 150 160 170 pF1KE3 IAKYSDGASKAAGVFGFFATIVFATDFYLIF-NDVAKFLKQGDSADETTAHKTEEENSDS ... :::. :: :::.. . .:: : . :. ...: .::: CCDS95 VTSR-DGAAIAAFVFGIILVSIFAYDAFKIYRTEMAPGASQGDQQ 120 130 140 150 180 pF1KE3 DSD 182 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:04:43 2016 done: Mon Nov 7 17:04:43 2016 Total Scan time: 2.010 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]