FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7704, 462 aa 1>>>pF1KB7704 462 - 462 aa - 462 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 11.0632+/-0.000477; mu= -9.0793+/- 0.030 mean_var=309.1133+/-62.449, 0's: 0 Z-trim(119.4): 10 B-trim: 340 in 1/56 Lambda= 0.072948 statistics sampled from 33435 (33445) to 33435 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.711), E-opt: 0.2 (0.392), width: 16 Scan time: 8.830 The best scores are: opt bits E(85289) NP_079161 (OMIM: 300314) transcription initiation ( 462) 2984 327.7 4e-89 XP_006724727 (OMIM: 300314) PREDICTED: transcripti ( 463) 2972 326.5 9.6e-89 NP_001161946 (OMIM: 300314) transcription initiati ( 376) 2439 270.3 6.2e-72 XP_005262209 (OMIM: 300314) PREDICTED: transcripti ( 377) 2427 269.1 1.5e-71 NP_005633 (OMIM: 600573) transcription initiation ( 349) 726 90.0 1.1e-17 >>NP_079161 (OMIM: 300314) transcription initiation fact (462 aa) initn: 2984 init1: 2984 opt: 2984 Z-score: 1721.1 bits: 327.7 E(85289): 4e-89 Smith-Waterman score: 2984; 99.8% identity (99.8% similar) in 462 aa overlap (1-462:1-462) 10 20 30 40 50 60 pF1KB7 MECPEGQLPISSENDSTPTVSTSEVTSQQEPQIPVDRGSETTYESSADIAGDEGTQIPAD ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: NP_079 MECPEGQLPISSENDSTPTVSTSEVTSQQEPQILVDRGSETTYESSADIAGDEGTQIPAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 EDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRNLARS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 EDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRNLARS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 QSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTADISQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 QSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTADISQM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRKTQKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRKTQKK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 VPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGSIPGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 VPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGSIPGF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 LISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 DCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 DCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIM 370 380 390 400 410 420 430 440 450 460 pF1KB7 KVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK :::::::::::::::::::::::::::::::::::::::::: NP_079 KVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK 430 440 450 460 >>XP_006724727 (OMIM: 300314) PREDICTED: transcription i (463 aa) initn: 2428 init1: 2124 opt: 2972 Z-score: 1714.2 bits: 326.5 E(85289): 9.6e-89 Smith-Waterman score: 2972; 99.6% identity (99.6% similar) in 463 aa overlap (1-462:1-463) 10 20 30 40 50 60 pF1KB7 MECPEGQLPISSENDSTPTVSTSEVTSQQEPQIPVDRGSETTYESSADIAGDEGTQIPAD ::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::: XP_006 MECPEGQLPISSENDSTPTVSTSEVTSQQEPQILVDRGSETTYESSADIAGDEGTQIPAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 EDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRNLARS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRNLARS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 QSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTADISQM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 QSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTADISQM 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 LVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRKTQKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 LVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRKTQKK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 VPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGSIPGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 VPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGSIPGF 250 260 270 280 290 300 310 320 330 340 350 pF1KB7 LISSGMSSHKQGHTSS-EYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEE :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: XP_006 LISSGMSSHKQGHTSSVEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEE 310 320 330 340 350 360 360 370 380 390 400 410 pF1KB7 EDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_006 EDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLI 370 380 390 400 410 420 420 430 440 450 460 pF1KB7 MKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK ::::::::::::::::::::::::::::::::::::::::::: XP_006 MKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK 430 440 450 460 >>NP_001161946 (OMIM: 300314) transcription initiation f (376 aa) initn: 2439 init1: 2439 opt: 2439 Z-score: 1412.4 bits: 270.3 E(85289): 6.2e-72 Smith-Waterman score: 2439; 100.0% identity (100.0% similar) in 376 aa overlap (87-462:1-376) 60 70 80 90 100 110 pF1KB7 IPADEDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRN :::::::::::::::::::::::::::::: NP_001 MSESQDEVPDEVENQFILRLPLEHACTVRN 10 20 30 120 130 140 150 160 170 pF1KB7 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB7 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB7 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB7 IPGFLISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 IPGFLISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKE 220 230 240 250 260 270 360 370 380 390 400 410 pF1KB7 EEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQK 280 290 300 310 320 330 420 430 440 450 460 pF1KB7 DLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK :::::::::::::::::::::::::::::::::::::::::::::: NP_001 DLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK 340 350 360 370 >>XP_005262209 (OMIM: 300314) PREDICTED: transcription i (377 aa) initn: 1883 init1: 1579 opt: 2427 Z-score: 1405.6 bits: 269.1 E(85289): 1.5e-71 Smith-Waterman score: 2427; 99.7% identity (99.7% similar) in 377 aa overlap (87-462:1-377) 60 70 80 90 100 110 pF1KB7 IPADEDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRN :::::::::::::::::::::::::::::: XP_005 MSESQDEVPDEVENQFILRLPLEHACTVRN 10 20 30 120 130 140 150 160 170 pF1KB7 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB7 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB7 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS 160 170 180 190 200 210 300 310 320 330 340 350 pF1KB7 IPGFLISSGMSSHKQGHTSS-EYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDK :::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::: XP_005 IPGFLISSGMSSHKQGHTSSVEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDK 220 230 240 250 260 270 360 370 380 390 400 410 pF1KB7 EEEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EEEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQ 280 290 300 310 320 330 420 430 440 450 460 pF1KB7 KDLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK ::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KDLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK 340 350 360 370 >>NP_005633 (OMIM: 600573) transcription initiation fact (349 aa) initn: 1213 init1: 669 opt: 726 Z-score: 438.6 bits: 90.0 E(85289): 1.1e-17 Smith-Waterman score: 1288; 57.1% identity (79.1% similar) in 378 aa overlap (87-462:1-349) 60 70 80 90 100 110 pF1KB7 IPADEDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRN ::.:.:..: :.:.::::::: :.: ::: NP_005 MSKSKDDAPHELESQFILRLPPEYASTVRR 10 20 30 120 130 140 150 160 170 pF1KB7 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD ..: :..::.: :.: :::::..:.:. ::::.::::::::.:::.:.:::::::::: NP_005 AVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTAD 40 50 60 70 80 90 180 190 200 210 220 230 pF1KB7 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK : :::: :.:::.. :::.:::::. .::.. .:.: .:.:::: :::::::.:::: NP_005 ICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRK 100 110 120 130 140 150 240 250 260 270 280 290 pF1KB7 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS : :: .::::::::.:::::: .::::::::::.:::: ::: :.:: NP_005 TAKK-------------KYIESPDVEKEVKRLLSTDAEAVSTRWEIIAEDETKEAENQG- 160 170 180 190 300 310 320 330 340 350 pF1KB7 IPGFLISS-GMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDK . ::: :::.:.::: : :.: :::.:.: :.. .:::: . .:: :: . NP_005 ---LDISSPGMSGHRQGHDSLEHDELREIFNDLSSSS------EDEDETQHQDE-EDINI 200 210 220 230 240 360 370 380 390 400 410 pF1KB7 EEEEEDCSEEYLERQLQAEFIESG-QYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQR . ::: :::::: .. :: :.. ::::...:: :::::.. . ::.. :..:.: NP_005 IDTEED-----LERQLQDKLNESDEQHQENEGTNQLVMGIQKQIDNMKGKLQETQDRAKR 250 260 270 280 290 300 420 430 440 450 460 pF1KB7 QKDLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK :.:::::::::.:::.::.::..:. .: ...:.: ::::.:. .:.: NP_005 QEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELESLLEK 310 320 330 340 462 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 17:03:35 2016 done: Mon Nov 7 17:03:36 2016 Total Scan time: 8.830 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]