FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7681, 343 aa 1>>>pF1KB7681 343 - 343 aa - 343 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.9983+/-0.000378; mu= -2.4615+/- 0.024 mean_var=372.8821+/-75.005, 0's: 0 Z-trim(124.9): 165 B-trim: 884 in 2/57 Lambda= 0.066418 statistics sampled from 47203 (47420) to 47203 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.834), E-opt: 0.2 (0.556), width: 16 Scan time: 8.660 The best scores are: opt bits E(85289) NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 2468 249.7 7e-66 NP_068745 (OMIM: 605420,609597,613451,615529) home ( 411) 721 82.3 2e-15 XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX ( 231) 686 78.7 1.4e-14 NP_008913 (OMIM: 601527,613456) ALX homeobox prote ( 326) 686 78.9 1.7e-14 NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 396 51.1 4.1e-06 NP_620689 (OMIM: 300004,300215,300382,300419,30835 ( 562) 394 51.2 6.5e-06 NP_003915 (OMIM: 209880,603851,613013) paired meso ( 314) 385 50.0 8.1e-06 NP_001128726 (OMIM: 167410,268220) paired box prot ( 505) 385 50.2 1.1e-05 NP_039236 (OMIM: 167410,268220) paired box protein ( 518) 385 50.3 1.1e-05 NP_002575 (OMIM: 167410,268220) paired box protein ( 520) 385 50.3 1.1e-05 NP_001306003 (OMIM: 605726,610362,610381,613757) r ( 230) 376 49.0 1.2e-05 NP_005160 (OMIM: 602078,602753) paired mesoderm ho ( 284) 371 48.6 1.9e-05 NP_116142 (OMIM: 605726,610362,610381,613757) reti ( 184) 366 47.9 2e-05 NP_005020 (OMIM: 107250,602669,610623) pituitary h ( 302) 366 48.2 2.8e-05 NP_001263380 (OMIM: 606701) dorsal root ganglia ho ( 263) 360 47.5 3.8e-05 NP_057391 (OMIM: 604675) paired mesoderm homeobox ( 253) 356 47.1 4.8e-05 NP_878314 (OMIM: 142993,610092,610093) visual syst ( 361) 357 47.4 5.7e-05 NP_700476 (OMIM: 137600,180500,180550,601542,60422 ( 271) 353 46.9 6.1e-05 XP_011530329 (OMIM: 137600,180500,180550,601542,60 ( 271) 353 46.9 6.1e-05 NP_001191328 (OMIM: 137600,180500,180550,601542,60 ( 271) 353 46.9 6.1e-05 NP_001191327 (OMIM: 137600,180500,180550,601542,60 ( 317) 353 47.0 6.8e-05 NP_001191326 (OMIM: 137600,180500,180550,601542,60 ( 317) 353 47.0 6.8e-05 NP_700475 (OMIM: 137600,180500,180550,601542,60422 ( 317) 353 47.0 6.8e-05 NP_000316 (OMIM: 137600,180500,180550,601542,60422 ( 324) 353 47.0 6.9e-05 NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 351 47.0 0.0001 NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 351 47.0 0.0001 NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 351 47.0 0.0001 NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 351 47.0 0.00011 XP_016870292 (OMIM: 604675) PREDICTED: paired meso ( 193) 338 45.3 0.00013 NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 345 46.3 0.00014 NP_001290437 (OMIM: 612019) intestine-specific hom ( 245) 339 45.5 0.00015 NP_852125 (OMIM: 122880,148820,193500,268220,60659 ( 407) 344 46.2 0.00015 XP_016883326 (OMIM: 122000,148300,605020,614195) P ( 280) 330 44.7 0.00029 NP_703149 (OMIM: 300154) homeobox protein ESX1 [Ho ( 406) 333 45.2 0.0003 NP_001243201 (OMIM: 122000,148300,605020,614195) v ( 301) 330 44.7 0.0003 NP_055403 (OMIM: 122000,148300,605020,614195) visu ( 365) 331 44.9 0.00032 NP_008833 (OMIM: 167420,202650) paired mesoderm ho ( 217) 324 44.0 0.00036 XP_006711451 (OMIM: 167420,202650) PREDICTED: pair ( 198) 321 43.7 0.00042 NP_000545 (OMIM: 120970,268000,602225,613829) cone ( 299) 324 44.1 0.00045 NP_073207 (OMIM: 167420,202650) paired mesoderm ho ( 245) 321 43.8 0.00048 NP_757379 (OMIM: 607410) diencephalon/mesencephalo ( 377) 323 44.2 0.00056 XP_016855778 (OMIM: 607410) PREDICTED: diencephalo ( 377) 323 44.2 0.00056 XP_011538970 (OMIM: 607410) PREDICTED: diencephalo ( 377) 323 44.2 0.00056 NP_001297090 (OMIM: 106210,120430,136520,148190,16 ( 286) 313 43.1 0.00091 NP_001297089 (OMIM: 106210,120430,136520,148190,16 ( 286) 313 43.1 0.00091 NP_671725 (OMIM: 607410) diencephalon/mesencephalo ( 382) 315 43.4 0.00096 NP_002644 (OMIM: 119800,186550,602149) pituitary h ( 314) 313 43.1 0.00096 NP_115485 (OMIM: 604529) homeobox protein orthoped ( 325) 311 42.9 0.0011 NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 313 43.3 0.0012 NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 313 43.3 0.0012 >>NP_006483 (OMIM: 136760,606014) homeobox protein arist (343 aa) initn: 2468 init1: 2468 opt: 2468 Z-score: 1303.7 bits: 249.7 E(85289): 7e-66 Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343) 10 20 30 40 50 60 pF1KB7 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI 250 260 270 280 290 300 310 320 330 340 pF1KB7 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT ::::::::::::::::::::::::::::::::::::::::::: NP_006 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT 310 320 330 340 >>NP_068745 (OMIM: 605420,609597,613451,615529) homeobox (411 aa) initn: 681 init1: 583 opt: 721 Z-score: 398.1 bits: 82.3 E(85289): 2e-15 Smith-Waterman score: 731; 41.1% identity (63.1% similar) in 360 aa overlap (8-343:76-411) 10 20 30 pF1KB7 MDPEHCAPFRVGP-APGPYVASGDEP--PGPQGTPAA :.. : : : . .: : :: : NP_068 TFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQP 50 60 70 80 90 100 40 50 60 70 80 pF1KB7 APHLH---PAPPRGPRL-TRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHF--YE :. . : :: :.: . :: :: :. : : ..:: . NP_068 QPQQQQPQPQPPAQPHLYLQRGAC----------KTPPDGSLK-LQEG---SSGHSAALQ 110 120 130 140 150 90 100 110 120 130 140 pF1KB7 GPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQ----GSPGPC-LASLHLPLSPGLPDS : :.:.. . :.:: : :. : :. : :: :: :: :: .. NP_068 VPCYAKESS---LGEPELPPDSDTVGMDS-SYLSVKEAGVKGPQDRASSDLP-SP--LEK 160 170 180 190 200 150 160 170 180 190 200 pF1KB7 MELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQN . .::.:::::::::...::::::::::::::::::::::::.::::::::::::::: NP_068 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN 210 220 230 240 250 260 210 220 230 240 250 260 pF1KB7 RRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW-ASPGSGSPGGPCLVS ::::::::::.:..:. :. :..::.. .: :.... :.:: : .. :..:: :.: NP_068 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP 270 280 290 300 310 320 270 280 290 300 310 pF1KB7 PEGIPSPCMSPYSHPHGS----VAGFMGVPAPSA----AHPG-IYSIHGFPPTLGGHSFE . .:. ::::..:: :: :. :..: . .. .: : ... .. : :.: .: NP_068 CDPVPA-CMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNG--YE 330 340 350 360 370 380 320 330 340 pF1KB7 PSSDGDYKSPSLVSLRVKPKEPPGLLNWTT ... : :. :...::.: :: . ..:.: NP_068 LNGEPDRKTSSIAALRMKAKEHSAAISWAT 390 400 410 >>XP_011537084 (OMIM: 601527,613456) PREDICTED: ALX home (231 aa) initn: 681 init1: 578 opt: 686 Z-score: 382.9 bits: 78.7 E(85289): 1.4e-14 Smith-Waterman score: 686; 52.9% identity (75.0% similar) in 208 aa overlap (140-341:24-229) 110 120 130 140 150 160 pF1KB7 CRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELE : :. . ..:::::.::::...:::::: XP_011 MDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELE 10 20 30 40 50 170 180 190 200 210 220 pF1KB7 KVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYD ::::::::::::.::::::::.::::::::::::::::::::::::.::.... :.:.:: XP_011 KVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYD 60 70 80 90 100 110 230 240 250 260 270 280 pF1KB7 ISVLPRTDSHPQLQNSLWASPGSG-SPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVP :::::::::.::.::.:::. .:: : :.. :. : ::.:::: . ... : XP_011 ISVLPRTDSYPQIQNNLWAGNASGGSVVTSCML-PRDTSS-CMTPYSHSPRTDSSYTGFS 120 130 140 150 160 170 290 300 310 320 330 340 pF1KB7 APSAAHPGIYSIHGFPPTL-----GGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT . . . : .: .::.:: . . . .: :.. ::.: :: . ..: XP_011 NHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM 180 190 200 210 220 230 >>NP_008913 (OMIM: 601527,613456) ALX homeobox protein 1 (326 aa) initn: 704 init1: 578 opt: 686 Z-score: 381.1 bits: 78.9 E(85289): 1.7e-14 Smith-Waterman score: 686; 52.9% identity (75.0% similar) in 208 aa overlap (140-341:119-324) 110 120 130 140 150 160 pF1KB7 CRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELE : :. . ..:::::.::::...:::::: NP_008 HTELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELE 90 100 110 120 130 140 170 180 190 200 210 220 pF1KB7 KVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYD ::::::::::::.::::::::.::::::::::::::::::::::::.::.... :.:.:: NP_008 KVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYD 150 160 170 180 190 200 230 240 250 260 270 280 pF1KB7 ISVLPRTDSHPQLQNSLWASPGSG-SPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVP :::::::::.::.::.:::. .:: : :.. :. : ::.:::: . ... : NP_008 ISVLPRTDSYPQIQNNLWAGNASGGSVVTSCML-PRDTSS-CMTPYSHSPRTDSSYTGFS 210 220 230 240 250 260 290 300 310 320 330 340 pF1KB7 APSAAHPGIYSIHGFPPTL-----GGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT . . . : .: .::.:: . . . .: :.. ::.: :: . ..: NP_008 NHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM 270 280 290 300 310 320 >>NP_038463 (OMIM: 601881,611038) retinal homeobox prote (346 aa) initn: 383 init1: 328 opt: 396 Z-score: 230.7 bits: 51.1 E(85289): 4.1e-06 Smith-Waterman score: 448; 34.7% identity (55.3% similar) in 331 aa overlap (27-334:46-334) 10 20 30 40 50 pF1KB7 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGP : :: : . : : :: ::: : NP_038 SLAGHLLRSPGGSTSRLHSIEAILGFTKDDGILGTFPAERGARGAKERDRRLGARPAC-P 20 30 40 50 60 70 60 70 80 90 100 110 pF1KB7 LEPYL-PEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPR : ::. ::: :.:: . ::.: : : :. NP_038 KAPEEGSEPSPPPA-------PAPAPE----YEAPR------------PY----C---PK 80 90 100 120 130 140 150 160 170 pF1KB7 DGPSNLQGSPGPCLASLHLPLSPGLPDSM--ELAKNKSKKRRNRTTFSTFQLEELEKVFQ . :.. . ::: ::..:. .. : . :.:.:::::::.:.::.:::..:. NP_038 E-PGEARPSPG-------LPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFE 110 120 130 140 150 180 190 200 210 220 pF1KB7 KTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYG----KIQEG------RNP :.::::::.::.:: ...: :.::::::::::::::..:. :.:.. :.: NP_038 KSHYPDVYSREELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEVSSMKLQDSPLLSFSRSP 160 170 180 190 200 210 230 240 250 260 270 pF1KB7 FTAAYD-ISVLPRTDSHPQ---LQNSLWASPGSGSPGGPCLVSPEGIPSPCMS-PYSH-P .:. . ... : . . : : : .: . :. : : :. : .: : :. : NP_038 PSATLSPLGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTP 220 230 240 250 260 270 280 290 300 310 320 330 pF1KB7 HGSVAGFMGVPAPSAAHPGIYSIHGFPPTLG-GHSFE---PSSDGDYKSPSLVSLRVKPK :.. : : . ::. . ::. : .: : ...: .. :...::.: : NP_038 PPPPPPFLNSP-PLG--PGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSIAALRLKAK 280 290 300 310 320 330 340 pF1KB7 EPPGLLNWTT : NP_038 EHIQAIGKPWQAL 340 >>NP_620689 (OMIM: 300004,300215,300382,300419,308350,30 (562 aa) initn: 400 init1: 366 opt: 394 Z-score: 227.1 bits: 51.2 E(85289): 6.5e-06 Smith-Waterman score: 423; 45.7% identity (66.5% similar) in 173 aa overlap (136-299:313-478) 110 120 130 140 150 160 pF1KB7 LPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQL :: : :: : . : :.:: ::::...:: NP_620 ATEGGELSPKEELLLHPEDAEGKDGEDSVCLSAG-SDSEE-GLLKRKQRRYRTTFTSYQL 290 300 310 320 330 340 170 180 190 200 210 220 pF1KB7 EELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRN--- ::::..:::::::::..::.::.: ::::::::::::::::::::::. : . . NP_620 EELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWRKREKAGAQTHPPGLPF 350 360 370 380 390 400 230 240 250 260 270 pF1KB7 --PFTAAYDIS----VLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSH :..:.. .: . : :: :... :. .... . : : : : : . : . NP_620 PGPLSATHPLSPYLDASPFPPHHPALDSAWTAAAAAAAAAFPSLPPPPG--SASLPPSGA 410 420 430 440 450 280 290 300 310 320 330 pF1KB7 PHGSVAGFMGVPAPSAAHPGIYSIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPP : : .. :.: : ::.. : NP_620 PLG-LSTFLG--AAVFRHPAFISPAFGRLFSTMAPLTSASTAAALLRQPTPAVEGAVASG 460 470 480 490 500 510 >>NP_003915 (OMIM: 209880,603851,613013) paired mesoderm (314 aa) initn: 353 init1: 326 opt: 385 Z-score: 225.5 bits: 50.0 E(85289): 8.1e-06 Smith-Waterman score: 396; 39.1% identity (60.4% similar) in 230 aa overlap (98-318:37-240) 70 80 90 100 110 120 pF1KB7 PAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQGSPGP :.:..: :. : .: .: .:: NP_003 SYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSGCPSL--TPGS 10 20 30 40 50 60 130 140 150 160 170 pF1KB7 C-LASLH-LPLSP--GLPDSMELAKN----KSKKRRNRTTFSTFQLEELEKVFQKTHYPD : :..:. :: ..: .. .. : :.:: ::::.. ::.:::.:: .::::: NP_003 CSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPD 70 80 90 100 110 120 180 190 200 210 220 230 pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH .:.::.:::. :::::::::::::::::.::.:: . . :: . : ..:: NP_003 IYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAA-----AAKNGSSGKKSDSS 130 140 150 160 170 240 250 260 270 280 290 pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSP-CMSPYSHPHGSVAGFMGVPAPSAAHPGIY . ... : : ::: .:. :.: : :. .: : :.:..: :: NP_003 RDDESKEAKSTDPDSTGGP---GPNPNPTPSC--------GANGGGGGGPSPAGA-PGAA 180 190 200 210 220 300 310 320 330 340 pF1KB7 SIHGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT . : :: . ::.. : NP_003 G----P---GGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPI 230 240 250 260 270 280 >>NP_001128726 (OMIM: 167410,268220) paired box protein (505 aa) initn: 370 init1: 319 opt: 385 Z-score: 223.0 bits: 50.2 E(85289): 1.1e-05 Smith-Waterman score: 385; 35.8% identity (65.8% similar) in 193 aa overlap (150-336:214-398) 120 130 140 150 160 170 pF1KB7 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD : :.::.::::.. :::::::.:..::::: NP_001 AKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPD 190 200 210 220 230 240 180 190 200 210 220 230 pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH .:.::.:: :: ::::::::::.::::.:::. ... . . ... . .: . NP_001 IYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPY 250 260 270 280 290 300 240 250 260 270 280 290 pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS :: .: . . .. :: . :. .: : . .:..:. .. :.:. . .: NP_001 -QLPDSTYPTTTISQDGGSTVHRPQPLP-----PSTMHQGGLAAAAAAADTSSAYGARHS 310 320 330 340 350 300 310 320 330 340 pF1KB7 IHGFP-----PTLGGHSFEPSSDGDYKSPSLVSLRVKPKE-PPGLLNWTT . .. :. .. ..: :.: ::...:. .:. :: NP_001 FSSYSDSFMNPAAPSNHMNPVSNG--LSPQVMSILGNPSAVPPQPQADFSISPLHGGLDS 360 370 380 390 400 410 NP_001 ATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQTAVDYLAK 420 430 440 450 460 470 >>NP_039236 (OMIM: 167410,268220) paired box protein Pax (518 aa) initn: 370 init1: 319 opt: 385 Z-score: 222.9 bits: 50.3 E(85289): 1.1e-05 Smith-Waterman score: 385; 35.8% identity (65.8% similar) in 193 aa overlap (150-336:212-396) 120 130 140 150 160 170 pF1KB7 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD : :.::.::::.. :::::::.:..::::: NP_039 AKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPD 190 200 210 220 230 240 180 190 200 210 220 230 pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH .:.::.:: :: ::::::::::.::::.:::. ... . . ... . .: . NP_039 IYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPY 250 260 270 280 290 300 240 250 260 270 280 290 pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS :: .: . . .. :: . :. .: : . .:..:. .. :.:. . .: NP_039 -QLPDSTYPTTTISQDGGSTVHRPQPLP-----PSTMHQGGLAAAAAAADTSSAYGARHS 310 320 330 340 350 300 310 320 330 340 pF1KB7 IHGFP-----PTLGGHSFEPSSDGDYKSPSLVSLRVKPKE-PPGLLNWTT . .. :. .. ..: :.: ::...:. .:. :: NP_039 FSSYSDSFMNPAAPSNHMNPVSNG--LSPQVMSILGNPSAVPPQPQADFSISPLHGGLDS 360 370 380 390 400 410 NP_039 ATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQSECLVPWA 420 430 440 450 460 470 >>NP_002575 (OMIM: 167410,268220) paired box protein Pax (520 aa) initn: 370 init1: 319 opt: 385 Z-score: 222.8 bits: 50.3 E(85289): 1.1e-05 Smith-Waterman score: 385; 35.8% identity (65.8% similar) in 193 aa overlap (150-336:214-398) 120 130 140 150 160 170 pF1KB7 NLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPD : :.::.::::.. :::::::.:..::::: NP_002 AKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPD 190 200 210 220 230 240 180 190 200 210 220 230 pF1KB7 VYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSH .:.::.:: :: ::::::::::.::::.:::. ... . . ... . .: . NP_002 IYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPY 250 260 270 280 290 300 240 250 260 270 280 290 pF1KB7 PQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYS :: .: . . .. :: . :. .: : . .:..:. .. :.:. . .: NP_002 -QLPDSTYPTTTISQDGGSTVHRPQPLP-----PSTMHQGGLAAAAAAADTSSAYGARHS 310 320 330 340 350 300 310 320 330 340 pF1KB7 IHGFP-----PTLGGHSFEPSSDGDYKSPSLVSLRVKPKE-PPGLLNWTT . .. :. .. ..: :.: ::...:. .:. :: NP_002 FSSYSDSFMNPAAPSNHMNPVSNG--LSPQVMSILGNPSAVPPQPQADFSISPLHGGLDS 360 370 380 390 400 410 NP_002 ATSISASCSQRADSIKPGDSLPTSQAYCPPTYSTTGYSVDPVAGYQYGQYGQSECLVPWA 420 430 440 450 460 470 343 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:57:08 2016 done: Mon Nov 7 16:57:09 2016 Total Scan time: 8.660 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]