FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7681, 343 aa 1>>>pF1KB7681 343 - 343 aa - 343 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.5262+/-0.000957; mu= 0.5069+/- 0.058 mean_var=350.5316+/-70.792, 0's: 0 Z-trim(117.4): 133 B-trim: 168 in 1/50 Lambda= 0.068503 statistics sampled from 18019 (18167) to 18019 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.558), width: 16 Scan time: 2.940 The best scores are: opt bits E(32554) CCDS819.1 ALX3 gene_id:257|Hs108|chr1 ( 343) 2468 256.9 1.8e-68 CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11 ( 411) 721 84.3 1.9e-16 CCDS9028.1 ALX1 gene_id:8092|Hs108|chr12 ( 326) 686 80.7 1.8e-15 >>CCDS819.1 ALX3 gene_id:257|Hs108|chr1 (343 aa) initn: 2468 init1: 2468 opt: 2468 Z-score: 1342.8 bits: 256.9 E(32554): 1.8e-68 Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343) 10 20 30 40 50 60 pF1KB7 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI 250 260 270 280 290 300 310 320 330 340 pF1KB7 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT ::::::::::::::::::::::::::::::::::::::::::: CCDS81 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT 310 320 330 340 >>CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11 (411 aa) initn: 681 init1: 583 opt: 721 Z-score: 408.8 bits: 84.3 E(32554): 1.9e-16 Smith-Waterman score: 731; 41.1% identity (63.1% similar) in 360 aa overlap (8-343:76-411) 10 20 30 pF1KB7 MDPEHCAPFRVGP-APGPYVASGDEP--PGPQGTPAA :.. : : : . .: : :: : CCDS31 TFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQP 50 60 70 80 90 100 40 50 60 70 80 pF1KB7 APHLH---PAPPRGPRL-TRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHF--YE :. . : :: :.: . :: :: :. : : ..:: . CCDS31 QPQQQQPQPQPPAQPHLYLQRGAC----------KTPPDGSLK-LQEG---SSGHSAALQ 110 120 130 140 150 90 100 110 120 130 140 pF1KB7 GPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQ----GSPGPC-LASLHLPLSPGLPDS : :.:.. . :.:: : :. : :. : :: :: :: :: .. CCDS31 VPCYAKESS---LGEPELPPDSDTVGMDS-SYLSVKEAGVKGPQDRASSDLP-SP--LEK 160 170 180 190 200 150 160 170 180 190 200 pF1KB7 MELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQN . .::.:::::::::...::::::::::::::::::::::::.::::::::::::::: CCDS31 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN 210 220 230 240 250 260 210 220 230 240 250 260 pF1KB7 RRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW-ASPGSGSPGGPCLVS ::::::::::.:..:. :. :..::.. .: :.... :.:: : .. :..:: :.: CCDS31 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP 270 280 290 300 310 320 270 280 290 300 310 pF1KB7 PEGIPSPCMSPYSHPHGS----VAGFMGVPAPSA----AHPG-IYSIHGFPPTLGGHSFE . .:. ::::..:: :: :. :..: . .. .: : ... .. : :.: .: CCDS31 CDPVPA-CMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNG--YE 330 340 350 360 370 380 320 330 340 pF1KB7 PSSDGDYKSPSLVSLRVKPKEPPGLLNWTT ... : :. :...::.: :: . ..:.: CCDS31 LNGEPDRKTSSIAALRMKAKEHSAAISWAT 390 400 410 >>CCDS9028.1 ALX1 gene_id:8092|Hs108|chr12 (326 aa) initn: 704 init1: 578 opt: 686 Z-score: 391.2 bits: 80.7 E(32554): 1.8e-15 Smith-Waterman score: 686; 52.9% identity (75.0% similar) in 208 aa overlap (140-341:119-324) 110 120 130 140 150 160 pF1KB7 CRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELE : :. . ..:::::.::::...:::::: CCDS90 HTELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELE 90 100 110 120 130 140 170 180 190 200 210 220 pF1KB7 KVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYD ::::::::::::.::::::::.::::::::::::::::::::::::.::.... :.:.:: CCDS90 KVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYD 150 160 170 180 190 200 230 240 250 260 270 280 pF1KB7 ISVLPRTDSHPQLQNSLWASPGSG-SPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVP :::::::::.::.::.:::. .:: : :.. :. : ::.:::: . ... : CCDS90 ISVLPRTDSYPQIQNNLWAGNASGGSVVTSCML-PRDTSS-CMTPYSHSPRTDSSYTGFS 210 220 230 240 250 260 290 300 310 320 330 340 pF1KB7 APSAAHPGIYSIHGFPPTL-----GGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT . . . : .: .::.:: . . . .: :.. ::.: :: . ..: CCDS90 NHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM 270 280 290 300 310 320 343 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:57:07 2016 done: Mon Nov 7 16:57:08 2016 Total Scan time: 2.940 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]