FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB5742, 741 aa 1>>>pF1KB5742 741 - 741 aa - 741 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.3650+/-0.00138; mu= 4.7678+/- 0.081 mean_var=229.4485+/-49.919, 0's: 0 Z-trim(106.3): 186 B-trim: 206 in 1/48 Lambda= 0.084670 statistics sampled from 8702 (8895) to 8702 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.273), width: 16 Scan time: 3.240 The best scores are: opt bits E(32554) CCDS1347.1 RNASEL gene_id:6041|Hs108|chr1 ( 741) 4947 618.7 9.9e-177 >>CCDS1347.1 RNASEL gene_id:6041|Hs108|chr1 (741 aa) initn: 4947 init1: 4947 opt: 4947 Z-score: 3286.3 bits: 618.7 E(32554): 9.9e-177 Smith-Waterman score: 4947; 100.0% identity (100.0% similar) in 741 aa overlap (1-741:1-741) 10 20 30 40 50 60 pF1KB5 MESRDHNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MESRDHNNPQEGPTSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB5 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB5 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB5 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB5 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB5 CGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDWKPQSSHWGAALKDLHRIYRPMIGK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CGDLVMTARRNYDHSLVKVLLSHGAKEDFHPPAEDWKPQSSHWGAALKDLHRIYRPMIGK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB5 LKFFIDEKYKIADTSEGGIYLGFYEKQEVAVKTFCEGSPRAQREVSCLQSSRENSHLVTF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LKFFIDEKYKIADTSEGGIYLGFYEKQEVAVKTFCEGSPRAQREVSCLQSSRENSHLVTF 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB5 YGSESHRGHLFVCVTLCEQTLEACLDVHRGEDVENEEDEFARNVLSSIFKAVQELHLSCG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YGSESHRGHLFVCVTLCEQTLEACLDVHRGEDVENEEDEFARNVLSSIFKAVQELHLSCG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB5 YTHQDLQPQNILIDSKKAAHLADFDKSIKWAGDPQEVKRDLEDLGRLVLYVVKKGSISFE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 YTHQDLQPQNILIDSKKAAHLADFDKSIKWAGDPQEVKRDLEDLGRLVLYVVKKGSISFE 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB5 DLKAQSNEEVVQLSPDEETKDLIHRLFHPGEHVRDCLSDLLGHPFFWTWESRYRTLRNVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 DLKAQSNEEVVQLSPDEETKDLIHRLFHPGEHVRDCLSDLLGHPFFWTWESRYRTLRNVG 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB5 NESDIKTRKSESEILRLLQPGPSEHSKSFDKWTTKINECVMKKMNKFYEKRGNFYQNTVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 NESDIKTRKSESEILRLLQPGPSEHSKSFDKWTTKINECVMKKMNKFYEKRGNFYQNTVG 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB5 DLLKFIRNLGEHIDEEKHKKMKLKIGDPSLYFQKTFPDLVIYVYTKLQNTEYRKHFPQTH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 DLLKFIRNLGEHIDEEKHKKMKLKIGDPSLYFQKTFPDLVIYVYTKLQNTEYRKHFPQTH 670 680 690 700 710 720 730 740 pF1KB5 SPNKPQCDGAGGASGLASPGC ::::::::::::::::::::: CCDS13 SPNKPQCDGAGGASGLASPGC 730 740 741 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:53:33 2016 done: Mon Nov 7 16:53:33 2016 Total Scan time: 3.240 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]