FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3253, 589 aa 1>>>pF1KE3253 589 - 589 aa - 589 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.6595+/-0.000284; mu= 9.4318+/- 0.018 mean_var=145.3398+/-29.791, 0's: 0 Z-trim(123.0): 5 B-trim: 1634 in 2/54 Lambda= 0.106385 statistics sampled from 42099 (42104) to 42099 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.494), width: 16 Scan time: 10.250 The best scores are: opt bits E(85289) NP_149016 (OMIM: 606458) cysteine/serine-rich nucl ( 589) 4065 635.2 1.8e-181 XP_016862537 (OMIM: 606458) PREDICTED: cysteine/se ( 589) 4065 635.2 1.8e-181 NP_001307489 (OMIM: 606458) cysteine/serine-rich n ( 589) 4065 635.2 1.8e-181 NP_001307488 (OMIM: 606458) cysteine/serine-rich n ( 609) 4065 635.2 1.8e-181 XP_016862538 (OMIM: 606458) PREDICTED: cysteine/se ( 329) 2276 360.5 5.1e-99 >>NP_149016 (OMIM: 606458) cysteine/serine-rich nuclear (589 aa) initn: 4065 init1: 4065 opt: 4065 Z-score: 3379.0 bits: 635.2 E(85289): 1.8e-181 Smith-Waterman score: 4065; 99.8% identity (100.0% similar) in 589 aa overlap (1-589:1-589) 10 20 30 40 50 60 pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGILDENANLDASCFLNGGLEGSREGSLPG ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: NP_149 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGLEGSREGSLPG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP 490 500 510 520 530 540 550 560 570 580 pF1KE3 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV ::::::::::::::::::::::::::::::::::::::::::::::::: NP_149 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV 550 560 570 580 >>XP_016862537 (OMIM: 606458) PREDICTED: cysteine/serine (589 aa) initn: 4065 init1: 4065 opt: 4065 Z-score: 3379.0 bits: 635.2 E(85289): 1.8e-181 Smith-Waterman score: 4065; 99.8% identity (100.0% similar) in 589 aa overlap (1-589:1-589) 10 20 30 40 50 60 pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGILDENANLDASCFLNGGLEGSREGSLPG ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: XP_016 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGLEGSREGSLPG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP 490 500 510 520 530 540 550 560 570 580 pF1KE3 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV ::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV 550 560 570 580 >>NP_001307489 (OMIM: 606458) cysteine/serine-rich nucle (589 aa) initn: 4065 init1: 4065 opt: 4065 Z-score: 3379.0 bits: 635.2 E(85289): 1.8e-181 Smith-Waterman score: 4065; 99.8% identity (100.0% similar) in 589 aa overlap (1-589:1-589) 10 20 30 40 50 60 pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGILDENANLDASCFLNGGLEGSREGSLPG ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: NP_001 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGLEGSREGSLPG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP 490 500 510 520 530 540 550 560 570 580 pF1KE3 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV ::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV 550 560 570 580 >>NP_001307488 (OMIM: 606458) cysteine/serine-rich nucle (609 aa) initn: 4065 init1: 4065 opt: 4065 Z-score: 3378.8 bits: 635.2 E(85289): 1.8e-181 Smith-Waterman score: 4065; 99.8% identity (100.0% similar) in 589 aa overlap (1-589:21-609) 10 20 30 40 pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVS :::::::::::::::::::::::::::::::::::::::: NP_001 MSETRLRLSVPRPQSTSGTTMTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVS 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE3 RAWDSEEEGPWDQMPLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RAWDSEEEGPWDQMPLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGF 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE3 TSVPSRGGCTLGMALRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSVPSRGGCTLGMALRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAG 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE3 VPQAEAGLPPVVDAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VPQAEAGLPPVVDAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRID 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE3 REEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 REEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMG 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE3 RVEFNQARVQTHFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RVEFNQARVQTHFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMN 310 320 330 340 350 360 350 360 370 380 390 400 pF1KE3 NELGDNSCSSDMTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 NELGDNSCSSDMTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDS 370 380 390 400 410 420 410 420 430 440 450 460 pF1KE3 DFGGEEEEEEEGSVGNLDNLSCFHPADIFGTSDPGGLASWTHSYSGCSFTSGILDENANL ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: NP_001 DFGGEEEEEEEGSVGNLDNLSCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANL 430 440 450 460 470 480 470 480 490 500 510 520 pF1KE3 DASCFLNGGLEGSREGSLPGTSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DASCFLNGGLEGSREGSLPGTSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHY 490 500 510 520 530 540 530 540 550 560 570 580 pF1KE3 TSQKVSDSLDNIEAPHFPLPGLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TSQKVSDSLDNIEAPHFPLPGLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVP 550 560 570 580 590 600 pF1KE3 ASLMEPVPV ::::::::: NP_001 ASLMEPVPV >>XP_016862538 (OMIM: 606458) PREDICTED: cysteine/serine (329 aa) initn: 2276 init1: 2276 opt: 2276 Z-score: 1898.8 bits: 360.5 E(85289): 5.1e-99 Smith-Waterman score: 2276; 99.7% identity (100.0% similar) in 329 aa overlap (261-589:1-329) 240 250 260 270 280 290 pF1KE3 RQSREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQ :::::::::::::::::::::::::::::: XP_016 MDHTAFPCGCCREGCENPMGRVEFNQARVQ 10 20 30 300 310 320 330 340 350 pF1KE3 THFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 THFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSS 40 50 60 70 80 90 360 370 380 390 400 410 pF1KE3 DMTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DMTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEE 100 110 120 130 140 150 420 430 440 450 460 470 pF1KE3 EGSVGNLDNLSCFHPADIFGTSDPGGLASWTHSYSGCSFTSGILDENANLDASCFLNGGL ::::::::::::::::::::::::::::::::::::::::::.::::::::::::::::: XP_016 EGSVGNLDNLSCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGL 160 170 180 190 200 210 480 490 500 510 520 530 pF1KE3 EGSREGSLPGTSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 EGSREGSLPGTSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLD 220 230 240 250 260 270 540 550 560 570 580 pF1KE3 NIEAPHFPLPGLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 NIEAPHFPLPGLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV 280 290 300 310 320 589 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:52:52 2016 done: Mon Nov 7 16:52:53 2016 Total Scan time: 10.250 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]