FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3253, 589 aa 1>>>pF1KE3253 589 - 589 aa - 589 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.1514+/-0.000705; mu= 12.4724+/- 0.043 mean_var=140.5344+/-27.574, 0's: 0 Z-trim(115.2): 6 B-trim: 50 in 1/51 Lambda= 0.108189 statistics sampled from 15705 (15709) to 15705 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.483), width: 16 Scan time: 3.920 The best scores are: opt bits E(32554) CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 ( 589) 4065 645.7 4.8e-185 CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 ( 585) 951 159.7 9.7e-39 CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 ( 543) 891 150.3 6.1e-36 >>CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 (589 aa) initn: 4065 init1: 4065 opt: 4065 Z-score: 3435.7 bits: 645.7 E(32554): 4.8e-185 Smith-Waterman score: 4065; 99.8% identity (100.0% similar) in 589 aa overlap (1-589:1-589) 10 20 30 40 50 60 pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQSRSCSPSSSVSRAWDSEEEGPWDQMPLPDRD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 FCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSAC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 RRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDASV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 EEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGCH 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 CDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTRL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 QLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTASS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 SASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGILDENANLDASCFLNGGLEGSREGSLPG ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: CCDS26 SCFHPADIFGTSDPGGLASWTHSYSGCSFTSGVLDENANLDASCFLNGGLEGSREGSLPG 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 TSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLP 490 500 510 520 530 540 550 560 570 580 pF1KE3 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS26 GLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV 550 560 570 580 >>CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 (585 aa) initn: 964 init1: 567 opt: 951 Z-score: 808.9 bits: 159.7 E(32554): 9.7e-39 Smith-Waterman score: 983; 37.3% identity (61.0% similar) in 544 aa overlap (1-538:1-494) 10 20 30 40 50 pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQS-RSCSPSSSVSRAWDSEEEGPWDQMPLPDR :.:.:::::...: .:: :.: : . : :.. :: : :.. :. CCDS22 MSGILKRKFEEVD----------GSSPCSSVRESDDEVSSSESADS---G--DSVN-PST 10 20 30 40 60 70 80 90 100 110 pF1KE3 DFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMALRHSA . ::: ::::: .: : : :. .::.:: : ::::::::.:: ::::. ::.. CCDS22 S----SHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGSTLGMSSRHNS 50 60 70 80 90 100 120 130 140 150 160 170 pF1KE3 CRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAGVPQAEAGLPPVVDAIDDAS :...:.:::.:: : ..: ::..:.::::. :. :.. :. ..: . ..: :.: . CCDS22 VRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEASTLTLDDISDDD 110 120 130 140 150 160 180 190 200 210 220 230 pF1KE3 VEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQSREDCGC .. : . ...: :::: :...::::::::::..:: :::.::.:.: ::::::: CCDS22 IDLD------NTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSREDCGC 170 180 190 200 210 240 250 260 270 280 290 pF1KE3 HCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTHFIHTLTR : .:::.::.:::::::::.:. .::::: .::: : ::.::: ::.:::.::. . CCDS22 DCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHTIMK 220 230 240 250 260 270 300 310 320 330 340 350 pF1KE3 LQLEQEAESFRELEAPAQGSPPSPGEEALVPTFPLAKPPMNNELGDNSCSSDMTDSSTAS :.::.. :: . :. .. : :.:. .. ..: : .. :. CCDS22 LELEKN----REQQIPTLNGCHSEISAHSSSMGPVAHS-VEYSIAD---SFEIETEPQAA 280 290 300 310 320 360 370 380 390 400 410 pF1KE3 SSASGTSEAPDCP---THPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEEGSVGN ..: :: . : .: :: :.: .. :. :.:: ::::::: . CCDS22 VLHLQSAEELDCQGEEEEEEEDGSSFCSGVTDSS-TQSLAPSESDEEEEEEEEEEEEEDD 330 340 350 360 370 380 420 430 440 450 460 470 pF1KE3 LDNLSCFHPADIFGTSDPGGLASWTHSYSGCSFTSGI-LDENANLDASCFLNGG-LEGSR :. .: : . : : . : ...: . :. .:: . :.. : . CCDS22 DDD-----KGDGF-VEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTLYYQI 390 400 410 420 430 480 490 500 510 520 530 pF1KE3 EGSLPGTSVPPSMDAGRSSSVDLSLSSCDSFELLQALPDYSLGPHYTSQKVSDSLDNIEA .. .::: :.. . : : .. :. .: :.. :. . . .. . : CCDS22 DSHIPGT---PNQISENYSERDTVKNGT-----LSLVP-YTMTPEQFVDYARQAEEAYGA 440 450 460 470 480 490 540 550 560 570 580 pF1KE3 PHFPLPGLSPPGDASSCFLESLMGFSEPAAEALDPFIDSQFEDTVPASLMEPVPV :.: CCDS22 SHYPAANPSVIVCCSSSENDSGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGD 500 510 520 530 540 550 >>CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 (543 aa) initn: 994 init1: 551 opt: 891 Z-score: 758.8 bits: 150.3 E(32554): 6.1e-36 Smith-Waterman score: 905; 49.4% identity (68.8% similar) in 324 aa overlap (5-323:9-296) 10 20 30 40 50 pF1KE3 MTGLLKRKFDQLDEDNSSVSSSSS--SSGCQSRSCSPSSSVSRAWDSEEEGPWDQM ::::::..: .::::.:.. ::. .. :: :.. CCDS88 MDAFTGSGLKRKFDDVDV-GSSVSNSDDEISSSDSADSC------------------DSL 10 20 30 40 60 70 80 90 100 110 pF1KE3 PLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGITVFYFPRCQGFTSVPSRGGCTLGMA : :::: ::::: .. : : :: .::.:: : ::::::::.:: .:::: CCDS88 NPPT-----TASFTPTSILKRQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSSLGMA 50 60 70 80 90 120 130 140 150 160 170 pF1KE3 LRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKLEMLQWKLSAAG-VPQAEA-GLPPVV ::.. : ..: :::::: ..: ::..::::::. . ::. : : ..:: :: CCDS88 QRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTKNGTVESVEADGL---- 100 110 120 130 140 150 180 190 200 210 220 230 pF1KE3 DAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRALLRASGVRRIDREEKRELQALRQ ..::.: .:: . : . .... :::: :..:::::::::::.::: :::.::.:.: CCDS88 -TLDDVS-DED--IDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRL 160 170 180 190 200 240 250 260 270 280 290 pF1KE3 SREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCGCCREGCENPMGRVEFNQARVQTH :::.::: : ::::.:.:: ::::::.:. .::::: :.:: : ::.::: ::.:: CCDS88 SREECGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTH 210 220 230 240 250 260 300 310 320 330 340 350 pF1KE3 FIHTLTRLQLEQEAESFRELEAPAQGSP-PSPGEEALVPTFPLAKPPMNNELGDNSCSSD ..::. .:.:: : :.. :: . ::: CCDS88 YLHTIMKLELE----SKRQVSRPAAPDEEPSPTASCSLTGAQGSETQDFQEFIAENETAV 270 280 290 300 310 320 360 370 380 390 400 410 pF1KE3 MTDSSTASSSASGTSEAPDCPTHPGLPGPGFQPGVDDDSLARILSFSDSDFGGEEEEEEE CCDS88 MHLQSAEELERLKAEEDSSGSSASLDSSIESLGVCILEEPLAVPEELCPGLTAPILIQAQ 330 340 350 360 370 380 589 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:52:51 2016 done: Mon Nov 7 16:52:52 2016 Total Scan time: 3.920 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]