FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4194, 703 aa 1>>>pF1KE4194 703 - 703 aa - 703 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 12.9145+/-0.00116; mu= -13.0032+/- 0.070 mean_var=442.3221+/-91.041, 0's: 0 Z-trim(114.9): 7 B-trim: 0 in 0/54 Lambda= 0.060982 statistics sampled from 15463 (15468) to 15463 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.475), width: 16 Scan time: 4.860 The best scores are: opt bits E(32554) CCDS41720.1 RNF214 gene_id:257160|Hs108|chr11 ( 703) 4616 420.6 3.8e-117 CCDS60976.1 RNF214 gene_id:257160|Hs108|chr11 ( 548) 3311 305.7 1.2e-82 >>CCDS41720.1 RNF214 gene_id:257160|Hs108|chr11 (703 aa) initn: 4616 init1: 4616 opt: 4616 Z-score: 2216.5 bits: 420.6 E(32554): 3.8e-117 Smith-Waterman score: 4616; 100.0% identity (100.0% similar) in 703 aa overlap (1-703:1-703) 10 20 30 40 50 60 pF1KE4 MAASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQKQKNSPLLSVSSQTITKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MAASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQKQKNSPLLSVSSQTITKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 NNRNVHLEHSEQNPGSSAGDTSAAHQVVLGENLIATALCLSGSGSQSDLKDVASTAGEEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 NNRNVHLEHSEQNPGSSAGDTSAAHQVVLGENLIATALCLSGSGSQSDLKDVASTAGEEG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 DTSLRESLHPVTRSLKAGCHTKQLASRNCSEEKSPQTSILKEGNRDTSLDFRPVVSPANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 DTSLRESLHPVTRSLKAGCHTKQLASRNCSEEKSPQTSILKEGNRDTSLDFRPVVSPANG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 VEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 VEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEVNTDQDIEKNLDKMMTERTLLKERY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 QEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 QEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEILKAIQDVTIKREETKKKIEKEKKEF 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 LQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 LQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGEINRNIMEETERAWKAEILSLESRK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 ELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 ELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQEWETRLNGVRIMKKNVRDQFNSHIQ 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 LVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPSPSLAPRMPFSIGQVTMPMVMPSAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 LVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPSPSLAPRMPFSIGQVTMPMVMPSAD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 PRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 PRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGSLVSPHGPHMPPAASIPPPPGLGGV 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 KASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 KASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTNILQQIKTARTTMAGLTMEELIQLV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 AARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 AARLAEHERVAASTQPLGRIRALFPAPLAQISTPMFLPSAQVSYPGRSSHAPATCKLCLM 610 620 630 640 650 660 670 680 690 700 pF1KE4 CQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK ::::::::::::::::::::::::::::::::::::::::::: CCDS41 CQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTCPFCPTLK 670 680 690 700 >>CCDS60976.1 RNF214 gene_id:257160|Hs108|chr11 (548 aa) initn: 3306 init1: 3306 opt: 3311 Z-score: 1597.6 bits: 305.7 E(32554): 1.2e-82 Smith-Waterman score: 3311; 96.9% identity (98.6% similar) in 517 aa overlap (187-703:33-548) 160 170 180 190 200 210 pF1KE4 TSILKEGNRDTSLDFRPVVSPANGVEGVRVDQDDDQDSSSLKLSQNIAVQTDFKTADSEV : . .::.. : ... ..:::::::::: CCDS60 ASEVAGVVANAPSPPESSSLCASKSDEGLPDGLSTKDSAQ-KQKNSPLLSTDFKTADSEV 10 20 30 40 50 60 220 230 240 250 260 270 pF1KE4 NTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 NTDQDIEKNLDKMMTERTLLKERYQEVLDKQRQVENQLQVQLKQLQQRREEEMKNHQEIL 70 80 90 100 110 120 280 290 300 310 320 330 pF1KE4 KAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 KAIQDVTIKREETKKKIEKEKKEFLQKEQDLKAEIEKLCEKGRREVWEMELDRLKNQDGE 130 140 150 160 170 180 340 350 360 370 380 390 pF1KE4 INRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 INRNIMEETERAWKAEILSLESRKELLVLKLEEAEKEAELHLTYLKSTPPTLETVRSKQE 190 200 210 220 230 240 400 410 420 430 440 450 pF1KE4 WETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 WETRLNGVRIMKKNVRDQFNSHIQLVRNGAKLSSLPQIPTPTLPPPPSETDFMLQVFQPS 250 260 270 280 290 300 460 470 480 490 500 510 pF1KE4 PSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 PSLAPRMPFSIGQVTMPMVMPSADPRSLSFPILNPALSQPSQPSSPLPGSHGRNSPGLGS 310 320 330 340 350 360 520 530 540 550 560 570 pF1KE4 LVSPHGPHMPPAASIPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 LVSPHGPHMPPAASIPPPPGLGGVKASAETPRPQPVDKLEKILEKLLTRFPQCNKAQMTN 370 380 390 400 410 420 580 590 600 610 620 630 pF1KE4 ILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 ILQQIKTARTTMAGLTMEELIQLVAARLAEHERVAASTQPLGRIRALFPAPLAQISTPMF 430 440 450 460 470 480 640 650 660 670 680 690 pF1KE4 LPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 LPSAQVSYPGRSSHAPATCKLCLMCQKLVQPSELHPMACTHVLHKECIKFWAQTNTNDTC 490 500 510 520 530 540 700 pF1KE4 PFCPTLK ::::::: CCDS60 PFCPTLK 703 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:45:36 2016 done: Mon Nov 7 16:45:37 2016 Total Scan time: 4.860 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]