FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3136, 348 aa 1>>>pF1KE3136 348 - 348 aa - 348 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6066+/-0.000711; mu= 15.3655+/- 0.043 mean_var=77.5039+/-15.331, 0's: 0 Z-trim(110.7): 18 B-trim: 0 in 0/52 Lambda= 0.145684 statistics sampled from 11805 (11820) to 11805 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.363), width: 16 Scan time: 2.880 The best scores are: opt bits E(32554) CCDS31002.1 YOD1 gene_id:55432|Hs108|chr1 ( 348) 2373 507.8 5.4e-144 CCDS60402.1 YOD1 gene_id:55432|Hs108|chr1 ( 304) 1930 414.7 5.1e-116 >>CCDS31002.1 YOD1 gene_id:55432|Hs108|chr1 (348 aa) initn: 2373 init1: 2373 opt: 2373 Z-score: 2698.7 bits: 507.8 E(32554): 5.4e-144 Smith-Waterman score: 2373; 100.0% identity (100.0% similar) in 348 aa overlap (1-348:1-348) 10 20 30 40 50 60 pF1KE3 MFGPAKGRHFGVHPAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MFGPAKGRHFGVHPAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QGLSSRTRVRELQGQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLII :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 QGLSSRTRVRELQGQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLII 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 EEDQTRPRSSPAFTKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 EEDQTRPRSSPAFTKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 EMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 EMRRLIAQIVASDPDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 TQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 TQTVRIDRFGEDAGYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALEL 250 260 270 280 290 300 310 320 330 340 pF1KE3 ADEARRRRQFTDVNRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV :::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 ADEARRRRQFTDVNRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV 310 320 330 340 >>CCDS60402.1 YOD1 gene_id:55432|Hs108|chr1 (304 aa) initn: 1929 init1: 1929 opt: 1930 Z-score: 2196.3 bits: 414.7 E(32554): 5.1e-116 Smith-Waterman score: 1930; 95.4% identity (97.7% similar) in 305 aa overlap (44-348:2-304) 20 30 40 50 60 70 pF1KE3 PAPGFPGGVSQQAAGTKAGPAGAWPVGSRTDTMWRLRCKAKDGTHVLQGLSSRTRVRELQ .:. . .::. : ..:::::::::::: CCDS60 METLHIIYSEAKSFT--VEGLSSRTRVRELQ 10 20 80 90 100 110 120 130 pF1KE3 GQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLIIEEDQTRPRSSPAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 GQIAAITGIAPGGQRILVGYPPECLDLSNGDTILEDLPIQSGDMLIIEEDQTRPRSSPAF 30 40 50 60 70 80 140 150 160 170 180 190 pF1KE3 TKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 TKRGASSYVRETLPVLTRTVVPADNSCLFTSVYYVVEGGVLNPACAPEMRRLIAQIVASD 90 100 110 120 130 140 200 210 220 230 240 250 pF1KE3 PDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 PDFYSEAILGKTNQEYCDWIKRDDTWGGAIEISILSKFYQCEICVVDTQTVRIDRFGEDA 150 160 170 180 190 200 260 270 280 290 300 310 pF1KE3 GYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALELADEARRRRQFTDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 GYTKRVLLIYDGIHYDPLQRNFPDPDTPPLTIFSSNDDIVLVQALELADEARRRRQFTDV 210 220 230 240 250 260 320 330 340 pF1KE3 NRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV ::::::::::::::::::::::::::::::::::: CCDS60 NRFTLRCMVCQKGLTGQAEAREHAKETGHTNFGEV 270 280 290 300 348 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:42:49 2016 done: Mon Nov 7 16:42:50 2016 Total Scan time: 2.880 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]