FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3307, 798 aa 1>>>pF1KE3307 798 - 798 aa - 798 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.7039+/-0.000902; mu= 10.3628+/- 0.055 mean_var=154.1999+/-30.374, 0's: 0 Z-trim(111.4): 23 B-trim: 0 in 0/54 Lambda= 0.103284 statistics sampled from 12334 (12347) to 12334 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.728), E-opt: 0.2 (0.379), width: 16 Scan time: 4.740 The best scores are: opt bits E(32554) CCDS11036.1 GSG2 gene_id:83903|Hs108|chr17 ( 798) 5397 816.5 0 >>CCDS11036.1 GSG2 gene_id:83903|Hs108|chr17 (798 aa) initn: 5397 init1: 5397 opt: 5397 Z-score: 4354.0 bits: 816.5 E(32554): 0 Smith-Waterman score: 5397; 99.7% identity (99.9% similar) in 798 aa overlap (1-798:1-798) 10 20 30 40 50 60 pF1KE3 MAASLPGPGSRLFRTYGAADGRRQRRPGREAAQWFPPQDRRRFFNSSGSSDASIGDPSQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MAASLPGPGSRLFRTYGAADGRRQRRPGREAAQWFPPQDRRRFFNSSGSSDASIGDPSQS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 DDPDDPDDPDFPGSPVRRRRRCPGGRVPKDRPSLTVTPKRWKLRARPSLTVTPRRLGLRA ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::::: CCDS11 DDPDDPDDPDFPGSPVRRRRRRPGGRVPKDRPSLTVTPKRWKLRARPSLTVTPRRLGLRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RPPQKCSTPCGPLRLPPFPSRDSGRLSPDLSVCGQPRDGDELGISASLFSSLASPCPGSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 RPPQKCSTPCGPLRLPPFPSRDSGRLSPDLSVCGQPRDGDELGISASLFSSLASPCPGSP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 TPRDSVISIGTSACLVAASAVPSGLHLPEVSLDRASLPCSQEEATGGAKDTRMVHQTRAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TPRDSVISIGTSACLVAASAVPSGLHLPEVSLDRASLPCSQEEATGGAKDTRMVHQTRAS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LRSVLFGLMNSGTPEDSEFRADGKNMRESCCKRKLVVGNGPEGPGLSSTGKRRATGQDSC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 LRSVLFGLMNSGTPEDSEFRADGKNMRESCCKRKLVVGNGPEGPGLSSTGKRRATGQDSC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 QERGLQEAVRREHQEASVPKGRIVPRGIDRLERTRSSRKSKHQEATETSLLHSHRFKKGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 QERGLQEAVRREHQEASVPKGRIVPRGIDRLERTRSSRKSKHQEATETSLLHSHRFKKGQ 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 KLGKDSFPTQDLTPLQNACFWTKTRASFSFHKKKIVTDVSEVCSIYTTATSLSGSLLSEC :::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::: CCDS11 KLGKDSFPTQDLTPLQNVCFWTKTRASFSFHKKKIVTDVSEVCSIYTTATSLSGSLLSEC 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 SNRPVMNRTSGAPSSWHSSSMYLLSPLNTLSISNKKASDAEKVYGECSQKGPVPFSHCLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SNRPVMNRTSGAPSSWHSSSMYLLSPLNTLSISNKKASDAEKVYGECSQKGPVPFSHCLP 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISK 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 ELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 ELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLF 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 IVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKT 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 SLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 SLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFD 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE3 IYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 IYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRT 730 740 750 760 770 780 790 pF1KE3 MLNFSSATDLLCQHSLFK :::::::::::::::::: CCDS11 MLNFSSATDLLCQHSLFK 790 798 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:41:37 2016 done: Mon Nov 7 16:41:38 2016 Total Scan time: 4.740 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]