FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4002, 203 aa 1>>>pF1KE4002 203 - 203 aa - 203 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4156+/-0.000972; mu= 12.9674+/- 0.058 mean_var=81.6116+/-16.909, 0's: 0 Z-trim(106.2): 103 B-trim: 320 in 1/47 Lambda= 0.141971 statistics sampled from 8720 (8843) to 8720 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.272), width: 16 Scan time: 1.590 The best scores are: opt bits E(32554) CCDS11297.1 RASL10B gene_id:91608|Hs108|chr17 ( 203) 1392 294.6 2.8e-80 CCDS13854.1 RASL10A gene_id:10633|Hs108|chr22 ( 203) 680 148.8 2.2e-36 >>CCDS11297.1 RASL10B gene_id:91608|Hs108|chr17 (203 aa) initn: 1392 init1: 1392 opt: 1392 Z-score: 1554.8 bits: 294.6 E(32554): 2.8e-80 Smith-Waterman score: 1392; 100.0% identity (100.0% similar) in 203 aa overlap (1-203:1-203) 10 20 30 40 50 60 pF1KE4 MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 PPISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 PPISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIGTSE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 TPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 TPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSVGCA 130 140 150 160 170 180 190 200 pF1KE4 RCKHVHAALRFQGALRRNRCAIM ::::::::::::::::::::::: CCDS11 RCKHVHAALRFQGALRRNRCAIM 190 200 >>CCDS13854.1 RASL10A gene_id:10633|Hs108|chr22 (203 aa) initn: 619 init1: 426 opt: 680 Z-score: 766.7 bits: 148.8 E(32554): 2.2e-36 Smith-Waterman score: 680; 52.9% identity (74.5% similar) in 208 aa overlap (1-203:1-203) 10 20 30 40 50 60 pF1KE4 MVSTYRVAVLGARGVGKSAIVRQFLYNEFSEVCVPTTARRLYLPAVVMNGHVHDLQILDF : .. ::::::: ::::.::.::::.... : :: . ::: :::...: :.::.: : CCDS13 MGGSLRVAVLGAPGVGKTAIIRQFLFGDYPERHRPTDGPRLYRPAVLLDGAVYDLSIRDG 10 20 30 40 50 60 70 80 90 100 110 pF1KE4 P---PISAFPVNTLQEWADTCCRGLRSVHAYILVYDICCFDSFEYVKTIRQQILETRVIG : :. : . .:: :. .:... :..:::::: :::.:::..::.: ::: : CCDS13 DVAGPGSS-PGGP-EEWPDAKDWSLQDTDAFVLVYDICSPDSFDYVKALRQRIAETRPAG 70 80 90 100 110 120 130 140 150 160 170 pF1KE4 TSETPIIIVGNKRDLQRGRVIPRWNVSHLVRKTWKCGYVECSAKYNWHILLLFSELLKSV . :.::..:::::: :: : :: .. :::. :.:::.:::::::::.: :: :::. CCDS13 APEAPILVVGNKRDRQRLRFGPRRALAALVRRGWRCGYLECSAKYNWHVLRLFRELLR-- 120 130 140 150 160 170 180 190 200 pF1KE4 GCA--RCKHVHAALRFQGALRRNRCAIM :: : . .: :::.::::. ::..: CCDS13 -CALVRARPAHPALRLQGALHPARCSLM 180 190 200 203 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:39:40 2016 done: Mon Nov 7 16:39:40 2016 Total Scan time: 1.590 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]