FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3259, 617 aa 1>>>pF1KE3259 617 - 617 aa - 617 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.5582+/-0.00109; mu= 4.8836+/- 0.066 mean_var=207.5160+/-40.104, 0's: 0 Z-trim(110.8): 14 B-trim: 0 in 0/52 Lambda= 0.089032 statistics sampled from 11840 (11846) to 11840 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.364), width: 16 Scan time: 4.150 The best scores are: opt bits E(32554) CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 ( 585) 3898 513.8 2.5e-145 CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 ( 543) 1503 206.2 9.6e-53 CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 ( 589) 952 135.4 2.1e-31 >>CCDS2225.1 CSRNP3 gene_id:80034|Hs108|chr2 (585 aa) initn: 3898 init1: 3898 opt: 3898 Z-score: 2722.6 bits: 513.8 E(32554): 2.5e-145 Smith-Waterman score: 3898; 100.0% identity (100.0% similar) in 585 aa overlap (33-617:1-585) 10 20 30 40 50 60 pF1KE3 CALFLRVKILQRVCRSRYIVHAGTCDSTAAMSGILKRKFEEVDGSSPCSSVRESDDEVSS :::::::::::::::::::::::::::::: CCDS22 MSGILKRKFEEVDGSSPCSSVRESDDEVSS 10 20 30 70 80 90 100 110 120 pF1KE3 SESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 SESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGS 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 TLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEAST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 TLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEAST 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 LTLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 LTLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRE 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 DCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 DCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLH 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE3 TIMKLELEKNREQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 TIMKLELEKNREQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHL 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE3 QSAEELDCQGEEEEEEEDGSSFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 QSAEELDCQGEEEEEEEDGSSFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKG 340 350 360 370 380 390 430 440 450 460 470 480 pF1KE3 DGFVEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTLYYQIDSHIPGTPNQI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 DGFVEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTLYYQIDSHIPGTPNQI 400 410 420 430 440 450 490 500 510 520 530 540 pF1KE3 SENYSERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSEND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 SENYSERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSEND 460 470 480 490 500 510 550 560 570 580 590 600 pF1KE3 SGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS22 SGVPCNSLYPEHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSIL 520 530 540 550 560 570 610 pF1KE3 HEECIKSPVVETVPV ::::::::::::::: CCDS22 HEECIKSPVVETVPV 580 >>CCDS8807.1 CSRNP2 gene_id:81566|Hs108|chr12 (543 aa) initn: 1511 init1: 1408 opt: 1503 Z-score: 1060.4 bits: 206.2 E(32554): 9.6e-53 Smith-Waterman score: 1577; 49.5% identity (72.0% similar) in 574 aa overlap (34-596:7-539) 10 20 30 40 50 60 pF1KE3 ALFLRVKILQRVCRSRYIVHAGTCDSTAAMSGILKRKFEEVDGSSPCSSVRESDDEVSSS :: :::::..:: . ::: .::::.::: CCDS88 MDAFTGSG-LKRKFDDVDVG---SSVSNSDDEISSS 10 20 30 70 80 90 100 110 120 pF1KE3 ESADSGDSVNPSTSSHFTPSSILKREKRLRTKNVHFSCVTVYYFTRRQGFTSVPSQGGST .:::: ::.:: :.. :::.:::::.:.:: :::.:. ::::::.::::::::::::::. CCDS88 DSADSCDSLNPPTTASFTPTSILKRQKQLRRKNVRFDQVTVYYFARRQGFTSVPSQGGSS 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE3 LGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKLNSLKLKMTKNGTVESEEASTL :::..::::::.::: :::.::: :::.:::::.::::.. :.:.:::::::: ::. : CCDS88 LGMAQRHNSVRSYTLCEFAQEQEVNHREILREHLKEEKLHAKKMKLTKNGTVESVEADGL 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE3 TLDDISDDDIDLDNTEVDEYFFLQPLPTKKRRALLRASGVKKIDVEEKHELRAIRLSRED ::::.::.:::..:.:::.::::::::::.::::::::::..::.:::.::::::::::. CCDS88 TLDDVSDEDIDVENVEVDDYFFLQPLPTKRRRALLRASGVHRIDAEEKQELRAIRLSREE 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE3 CGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCGCTKEGCSNTAGRIEFNPIRVRTHFLHT ::::::..:::..:.:: ::::::::::::::::...::.: ::::::::::::::.::: CCDS88 CGCDCRLYCDPEACACSQAGIKCQVDRMSFPCGCSRDGCGNMAGRIEFNPIRVRTHYLHT 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE3 IMKLELEKNREQQIPTLNGCHSEISAHSSSMGPVAHSVEYSIADSFEIETEPQAAVLHLQ :::::::..:. . :. . .: : : :.. : . : :. .: ..::.::: CCDS88 IMKLELESKRQVSRPAAPDEEPSPTASCSLTG--AQGSETQ--DFQEFIAENETAVMHLQ 280 290 300 310 320 370 380 390 400 410 420 pF1KE3 SAEELDCQGEEEEEEEDGSSFCSGVTDSSTQSLAPSESDEEEEEEEEEEEEEDDDDDKGD ::::: :. . ::: :: :. ::: .::. .: :: CCDS88 SAEEL----ERLKAEED-SSGSSASLDSSIESLGVCILEEPLAVPEELCP---------- 330 340 350 360 370 430 440 450 460 470 pF1KE3 GFVEGLGTHAEVVPLPSVLCYSDGTAVHESHAKNASFYANSSTL-YYQIDSH----IPGT :.. . .:.. : ::::..... . . :. : ::. : :::.... . : CCDS88 GLTAPILIQAQLPPGSSVLCFTENSDHPTASTVNSPSYLNSGPLVYYQVEQRPVLGVKGE 380 390 400 410 420 430 480 490 500 510 520 530 pF1KE3 PN--QISENY-SERDTVKNGTLSLVPYTMTPEQFVDYARQAEEAYGASHYPAANPSVIVC :. . : .. .:.: ...:: ... . .: : . : . :.. CCDS88 PGTEEGSASFPKEKDL---NVFSLPVTSLVACSSTDPAALCKSEVGKT------PTL--- 440 450 460 470 480 540 550 560 570 580 590 pF1KE3 CSSSENDSGVP--CNSLYPEHRSNHPQVEFHSY-LKGPSQEGFVSALNGDSHISEHPAEN .. .: :: ::... ::. : .. ..:: . ..... .. : .. CCDS88 ------EALLPEDCNPEEPENEDFHPSWSPSSLPFRTDNEEGCGMVKTSQQNEDRPPEDS 490 500 510 520 530 600 610 pF1KE3 SLSLAEKSILHEECIKSPVVETVPV :: : CCDS88 SLELPLAV 540 >>CCDS2682.1 CSRNP1 gene_id:64651|Hs108|chr3 (589 aa) initn: 964 init1: 567 opt: 952 Z-score: 677.5 bits: 135.4 E(32554): 2.1e-31 Smith-Waterman score: 984; 37.1% identity (61.2% similar) in 544 aa overlap (33-526:1-538) 10 20 30 40 50 pF1KE3 CALFLRVKILQRVCRSRYIVHAGTCDSTAAMSGILKRKFEEVD----------GSSPCSS :.:.:::::...: .:: :.: CCDS26 MTGLLKRKFDQLDEDNSSVSSSSSSSGCQS 10 20 30 60 70 80 90 100 pF1KE3 VRESDDEVSSSESADS---G--DSVN-PSTS----SHFTPSSILKREKRLRTKNVHFSCV : . : :.. :: : :.. :. . ::: ::::: .: : : :. . CCDS26 -RSCSPSSSVSRAWDSEEEGPWDQMPLPDRDFCGPRSFTPLSILKRARRERPGRVAFDGI 40 50 60 70 80 110 120 130 140 150 160 pF1KE3 TVYYFTRRQGFTSVPSQGGSTLGMSSRHNSVRQYTLGEFAREQERLHREMLREHLREEKL ::.:: : ::::::::.:: ::::. ::.. :...:.:::.:: : ..: ::..:.:::: CCDS26 TVFYFPRCQGFTSVPSRGGCTLGMALRHSACRRFSLAEFAQEQARARHEKLRQRLKEEKL 90 100 110 120 130 140 170 180 190 200 210 pF1KE3 NSLKLKMTKNGTVESEEASTLTLDDISDDDIDLD------NTEVDEYFFLQPLPTKKRRA . :. :.. :. ..: . ..: :.: ... : . ...: :::: :...::: CCDS26 EMLQWKLSAAGVPQAEAGLPPVVDAIDDASVEEDLAVAVAGGRLEEVSFLQPYPARRRRA 150 160 170 180 190 200 220 230 240 250 260 270 pF1KE3 LLRASGVKKIDVEEKHELRAIRLSREDCGCDCRVFCDPDTCTCSLAGIKCQVDRMSFPCG :::::::..:: :::.::.:.: ::::::: : .:::.::.:::::::::.:. .:::: CCDS26 LLRASGVRRIDREEKRELQALRQSREDCGCHCDRICDPETCSCSLAGIKCQMDHTAFPCG 210 220 230 240 250 260 280 290 300 310 320 330 pF1KE3 CTKEGCSNTAGRIEFNPIRVRTHFLHTIMKLELEKN----REQQIPTLNGCHSEISAHSS : .::: : ::.::: ::.:::.::. .:.::.. :: . :. .. : CCDS26 CCREGCENPMGRVEFNQARVQTHFIHTLTRLQLEQEAESFRELEAPAQGSPPSPGEEALV 270 280 290 300 310 320 340 350 360 370 380 pF1KE3 SMGPVAHS-VEYSIAD---SFEIETEPQAAVLHLQSAEELDCQGEEEEEEEDGSSFCSGV :.:. .. ..: : .. :. ..: :: . : .: :: CCDS26 PTFPLAKPPMNNELGDNSCSSDMTDSSTASSSASGTSEAPDCP---THPGLPGPGFQPGV 330 340 350 360 370 380 390 400 410 420 430 440 pF1KE3 TDSS-TQSLAPSESDEEEEEEEEEEEEEDDDDD-----KGDGF-VEGLGTHAEVVPLPSV :.: .. :. :.:: ::::::: . :. .: : . : : . : CCDS26 DDDSLARILSFSDSDFGGEEEEEEEGSVGNLDNLSCFHPADIFGTSDPGGLASWTHSYSG 390 400 410 420 430 440 450 460 470 480 490 pF1KE3 LCYSDGTAVHESHAKNASFYANSSTLYYQIDSHIPGTPNQISENYSERDTVKNGT----- ...:. . :. .:: . :.. : . .. .::: : . .. ..: . CCDS26 CSFTSGV-LDENANLDASCFLNGG-LEGSREGSLPGTSVPPSMDAGRSSSVDLSLSSCDS 450 460 470 480 490 500 500 510 520 530 540 550 pF1KE3 ---LSLVP-YTMTPEQFVDYARQAEEAYGASHYPAANPSVIVCCSSSENDSGVPCNSLYP :. .: :.. :. . . .. . : :.: CCDS26 FELLQALPDYSLGPHYTSQKVSDSLDNIEAPHFPLPGLSPPGDASSCFLESLMGFSEPAA 510 520 530 540 550 560 560 570 580 590 600 610 pF1KE3 EHRSNHPQVEFHSYLKGPSQEGFVSALNGDSHISEHPAENSLSLAEKSILHEECIKSPVV CCDS26 EALDPFIDSQFEDTVPASLMEPVPV 570 580 617 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:35:16 2016 done: Mon Nov 7 16:35:16 2016 Total Scan time: 4.150 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]