FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3534, 641 aa 1>>>pF1KE3534 641 - 641 aa - 641 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7864+/-0.00089; mu= 13.3379+/- 0.054 mean_var=120.6809+/-24.372, 0's: 0 Z-trim(109.9): 17 B-trim: 18 in 1/52 Lambda= 0.116749 statistics sampled from 11193 (11198) to 11193 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.344), width: 16 Scan time: 3.900 The best scores are: opt bits E(32554) CCDS73660.1 C14orf169 gene_id:79697|Hs108|chr14 ( 641) 4283 732.8 3.4e-211 CCDS43114.1 MINA gene_id:84864|Hs108|chr3 ( 465) 713 131.4 2.7e-30 CCDS2929.1 MINA gene_id:84864|Hs108|chr3 ( 464) 708 130.5 4.9e-30 >>CCDS73660.1 C14orf169 gene_id:79697|Hs108|chr14 (641 aa) initn: 4283 init1: 4283 opt: 4283 Z-score: 3905.0 bits: 732.8 E(32554): 3.4e-211 Smith-Waterman score: 4283; 99.7% identity (100.0% similar) in 641 aa overlap (1-641:1-641) 10 20 30 40 50 60 pF1KE3 MDGLQASAGPLRRGRPRRRRKPQPHSGSVLALPLRSRKIRKQLRSVVSRMAALRTQTLPS ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: CCDS73 MDGLQASAGPLRRGRPKRRRKPQPHSGSVLALPLRSRKIRKQLRSVVSRMAALRTQTLPS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 ENSEESRVESTADDLGDALPGGAAVAAVPDAARREPYGHLGPAELLEASPAARSLQTPSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 ENSEESRVESTADDLGDALPGGAAVAAVPDAARREPYGHLGPAELLEASPAARSLQTPSA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 RLVPASAPPARLVEVPAAPVRVVETSALLCTAQHLAAVQSSGAPATASGPQVDNTGGEPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 RLVPASAPPARLVEVPAAPVRVVETSALLCTAQHLAAVQSSGAPATASGPQVDNTGGEPA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 WDSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 WDSPLRRVLAELNRIPSSRRRAARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDHTYYQG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 LFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 LFSTADLDSMLRNEEVQFGQHLDAARYINGRRETLNPPGRALPAAAWSLYQAGCSLRLLC 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 PQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 PQAFSTTVWQFLAVLQEQFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 RPRAPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTL :::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 RPRVPTEELALTSSPNFSQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGVHSLHLTL 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 STYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 STYQRNTWGDFLEAILPLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEK 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 VRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VRVLVARLGHFAPVDAVADQRAKDFIHDSLPPVLTDRERALSVYGLPIRWEAGEPVNVGA 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 QLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 QLTTETEVHMLQDGIARLVGEGGHLFLYYTVENSRVYHLEEPKCLEIYPQQADAMELLLG 550 560 570 580 590 600 610 620 630 640 pF1KE3 SYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN ::::::::::::::::::::::::::::::::::::::::: CCDS73 SYPEFVRVGDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN 610 620 630 640 >>CCDS43114.1 MINA gene_id:84864|Hs108|chr3 (465 aa) initn: 657 init1: 280 opt: 713 Z-score: 657.3 bits: 131.4 E(32554): 2.7e-30 Smith-Waterman score: 785; 33.8% identity (62.2% similar) in 474 aa overlap (175-632:8-462) 150 160 170 180 190 200 pF1KE3 TSALLCTAQHLAAVQSSGAPATASGPQVDNTG-GEPAWDSPLRRVLAELNRIPSSRR--R :: :. .: ... : ::. CCDS43 MPKKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDS 10 20 30 210 220 230 240 250 pF1KE3 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDH---TYYQGLFSTADLDSMLRNEEVQF . ::: ::.:. . :....::.. .:..:.: ::: .::. .:: : : .. . . CCDS43 PSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKS-LCSRGMYY 40 50 60 70 80 90 260 270 280 290 300 310 pF1KE3 GQHLDAARYINGRRETLNPPGRA-LPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQE :. ... : .::....:: :.: . .. : .... :: :. .:.. :. CCDS43 GRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLEC 100 110 120 130 140 150 320 330 340 350 360 370 pF1KE3 QFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNF :::..:::::.:: .:::. :::::.:.:.:::::.: ::.:.: .: :: : . CCDS43 YFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVP---LAREYSVE- 160 170 180 190 200 210 380 390 400 410 420 430 pF1KE3 SQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGV-HSLHLTLSTYQRNTWGDFLEAIL ... .:.:: . .:.:::::::::: ::::. :. :: :.:.:::: :.::::: . CCDS43 AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTI 220 230 240 250 260 270 440 450 460 470 480 490 pF1KE3 PLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRRTAFMEKVRVLVARLGHFAPVDA : . .:.::.: :.::... . .. . : ..:. :.:. :: . . CCDS43 SGLVFDTAKEDVELRTGIPRQLL--LQVESTTVATRRLSGFL---RTLADRLE--GTKEL 280 290 300 310 320 500 510 520 530 540 550 pF1KE3 VADQRAKDFIHDSLPPVLTDRERALSVYG--LPIRWEAGEPVNVGAQLTTETEVHMLQDG .... :::: ::: . ::. : :: : .. : :. . . .: : CCDS43 LSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLP-RLDS----VVRLQFKDHIVLTVLPDQ 330 340 350 360 370 380 560 570 580 590 600 pF1KE3 IARLVGEGGHLFLYYTVENSRVYHL----EEPKCLEI-YP-QQADAMELLLGSYPEFVRV .. ...:....::: :. :: . . .: .. ::.. . .: : . : CCDS43 DQSDEAQEKMVYIYHSLKNSRETHMMGNEEETEFHGLRFPLSHLDALKQIWNS-PA-ISV 390 400 410 420 430 610 620 630 640 pF1KE3 GDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN :: . :.. ::. .:. . :. CCDS43 KDLKLTTDEEKESLVLSLWTECLIQVV 440 450 460 >>CCDS2929.1 MINA gene_id:84864|Hs108|chr3 (464 aa) initn: 657 init1: 280 opt: 708 Z-score: 652.7 bits: 130.5 E(32554): 4.9e-30 Smith-Waterman score: 778; 34.1% identity (62.1% similar) in 475 aa overlap (175-632:8-461) 150 160 170 180 190 200 pF1KE3 TSALLCTAQHLAAVQSSGAPATASGPQVDNTG-GEPAWDSPLRRVLAELNRIPSSRR--R :: :. .: ... : ::. CCDS29 MPKKAKPTGSGKEEGPAPCKQMKLEAAGGPSALNFDS 10 20 30 210 220 230 240 250 pF1KE3 AARLFEWLIAPMPPDHFYRRLWEREAVLVRRQDH---TYYQGLFSTADLDSMLRNEEVQF . ::: ::.:. . :....::.. .:..:.: ::: .::. .:: : : .. . . CCDS29 PSSLFESLISPIKTETFFKEFWEQKPLLIQRDDPALATYYGSLFKLTDLKS-LCSRGMYY 40 50 60 70 80 90 260 270 280 290 300 310 pF1KE3 GQHLDAARYINGRRETLNPPGRA-LPAAAWSLYQAGCSLRLLCPQAFSTTVWQFLAVLQE :. ... : .::....:: :.: . .. : .... :: :. .:.. :. CCDS29 GRDVNVCRCVNGKKKVLNKDGKAHFLQLRKDFDQKRATIQFHQPQRFKDELWRIQEKLEC 100 110 120 130 140 150 320 330 340 350 360 370 pF1KE3 QFGSMAGSNVYLTPPNSQGFAPHYDDIEAFVLQLEGRKLWRVYRPRAPTEELALTSSPNF :::..:::::.:: .:::. :::::.:.:.:::::.: ::.:.: .: :: : . CCDS29 YFGSLVGSNVYITPAGSQGLPPHYDDVEVFILQLEGEKHWRLYHPTVP---LAREYSVE- 160 170 180 190 200 210 380 390 400 410 420 430 pF1KE3 SQDDLGEPVLQTVLEPGDLLYFPRGFIHQAECQDGV-HSLHLTLSTYQRNTWGDFLEAIL ... .:.:: . .:.:::::::::: ::::. :. :: :.:.:::: :.::::: . CCDS29 AEERIGRPVHEFMLKPGDLLYFPRGTIHQADTPAGLAHSTHVTISTYQNNSWGDFLLDTI 220 230 240 250 260 270 440 450 460 470 480 490 pF1KE3 PLAVQAAMEENVEFRRGLPRDFMDYMGAQHSDSKDPRR-TAFMEKVRVLVARLGHFAPVD : . .:.::.: :.::... .: . :: ..:. :.:. :: . . CCDS29 SGLVFDTAKEDVELRTGIPRQLLLV----ESTTVATRRLSGFL---RTLADRLE--GTKE 280 290 300 310 320 500 510 520 530 540 550 pF1KE3 AVADQRAKDFIHDSLPPVLTDRERALSVYG--LPIRWEAGEPVNVGAQLTTETEVHMLQD .... :::: ::: . ::. : :: : .. : :. . . .: : CCDS29 LLSSDMKKDFIMHRLPPYSAGDGAELSTPGGKLP-RLDS----VVRLQFKDHIVLTVLPD 330 340 350 360 370 560 570 580 590 600 pF1KE3 GIARLVGEGGHLFLYYTVENSRVYHL----EEPKCLEI-YP-QQADAMELLLGSYPEFVR .. ...:....::: :. :: . . .: .. ::.. . .: : . CCDS29 QDQSDEAQEKMVYIYHSLKNSRETHMMGNEEETEFHGLRFPLSHLDALKQIWNS-PA-IS 380 390 400 410 420 430 610 620 630 640 pF1KE3 VGDLPCDSVEDQLSLATTLYDKGLLLTKMPLALN : :: . :.. ::. .:. . :. CCDS29 VKDLKLTTDEEKESLVLSLWTECLIQVV 440 450 460 641 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:32:03 2016 done: Mon Nov 7 16:32:04 2016 Total Scan time: 3.900 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]