Result of FASTA (ccds) for
pFN21AB8349
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8349, 262 aa
1>>>pF1KB8349 262 - 262 aa - 262 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7110+/-0.000584; mu= 14.1049+/- 0.035
mean_var=85.7944+/-17.426, 0's: 0 Z-trim(114.6): 7 B-trim: 126 in 1/50
Lambda= 0.138466
statistics sampled from 15202 (15206) to 15202 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.467), width: 16
Scan time: 2.390
The best scores are: opt bits E(32554)
CCDS14748.1 TAZ gene_id:6901|Hs108|chrX ( 292) 834 175.5 3.8e-44
CCDS14749.1 TAZ gene_id:6901|Hs108|chrX ( 262) 734 155.5 3.6e-38
CCDS35450.1 TAZ gene_id:6901|Hs108|chrX ( 248) 684 145.5 3.5e-35
CCDS14750.1 TAZ gene_id:6901|Hs108|chrX ( 278) 539 116.5 2e-26
>>CCDS14748.1 TAZ gene_id:6901|Hs108|chrX (292 aa)
initn: 1091 init1: 516 opt: 834 Z-score: 906.1 bits: 175.5 E(32554): 3.8e-44
Smith-Waterman score: 1206; 63.4% identity (64.4% similar) in 331 aa overlap (1-262:1-292)
10 20 30 40
pF1KB8 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTSEWAQ------------AEAGPPG
::::::::::::::::::::::::::::::::::::. . : :.
CCDS14 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPA
10 20 30 40 50 60
50 60 70 80 90
pF1KB8 YP---------C---PA-GGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
: : : :::::::::::::::::::::::::::::::::::::::::
CCDS14 TPLITVSNHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
70 80 90 100 110 120
100 110 120
pF1KB8 VCRG------------------------------DGVYQKGMDFILEKLNHGDWVHIFPE
:::: ::::::::::::::::::::::::::
CCDS14 VCRGAEFFQAENEGKGVLDTGRHMPGAGKRREKGDGVYQKGMDFILEKLNHGDWVHIFPE
130 140 150 160 170 180
130 140 150 160 170
pF1KB8 G--------------IGRLIAECHLNPIILPLWHVGEPGDGDREMASGVGGLGLPLVPGC
: :::::::::::::::::::::
CCDS14 GKVNMSSEFLRFKWGIGRLIAECHLNPIILPLWHVG------------------------
190 200 210
180 190 200 210 220 230
pF1KB8 PAPPHVWPSVHCAAGMNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVE
:::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ---------------MNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVE
220 230 240 250 260
240 250 260
pF1KB8 MRKALTDFIQEEFQHLKTQAEQLHNHLQPGR
:::::::::::::::::::::::::::::::
CCDS14 MRKALTDFIQEEFQHLKTQAEQLHNHLQPGR
270 280 290
>>CCDS14749.1 TAZ gene_id:6901|Hs108|chrX (262 aa)
initn: 542 init1: 542 opt: 734 Z-score: 798.8 bits: 155.5 E(32554): 3.6e-38
Smith-Waterman score: 1276; 69.8% identity (70.8% similar) in 301 aa overlap (1-262:1-262)
10 20 30 40
pF1KB8 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTSEWAQ------------AEAGPPG
::::::::::::::::::::::::::::::::::::. . : :.
CCDS14 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPA
10 20 30 40 50 60
50 60 70 80 90
pF1KB8 YP---------C---PA-GGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
: : : :::::::::::::::::::::::::::::::::::::::::
CCDS14 TPLITVSNHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
70 80 90 100 110 120
100 110 120 130 140
pF1KB8 VCRGDGVYQKGMDFILEKLNHGDWVHIFPEG--------------IGRLIAECHLNPIIL
::::::::::::::::::::::::::::::: :::::::::::::::
CCDS14 VCRGDGVYQKGMDFILEKLNHGDWVHIFPEGKVNMSSEFLRFKWGIGRLIAECHLNPIIL
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB8 PLWHVGEPGDGDREMASGVGGLGLPLVPGCPAPPHVWPSVHCAAGMNDVLPNSPPYFPRF
:::::: :::::::::::::::
CCDS14 PLWHVG---------------------------------------MNDVLPNSPPYFPRF
190 200
210 220 230 240 250 260
pF1KB8 GQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 GQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQPG
210 220 230 240 250 260
pF1KB8 R
:
CCDS14 R
>>CCDS35450.1 TAZ gene_id:6901|Hs108|chrX (248 aa)
initn: 938 init1: 684 opt: 684 Z-score: 745.2 bits: 145.5 E(32554): 3.5e-35
Smith-Waterman score: 1314; 73.2% identity (74.2% similar) in 287 aa overlap (1-262:1-248)
10 20 30 40
pF1KB8 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTSEWAQ------------AEAGPPG
::::::::::::::::::::::::::::::::::::. . : :.
CCDS35 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPA
10 20 30 40 50 60
50 60 70 80 90
pF1KB8 YP---------C---PA-GGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
: : : :::::::::::::::::::::::::::::::::::::::::
CCDS35 TPLITVSNHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB8 VCRGDGVYQKGMDFILEKLNHGDWVHIFPEGIGRLIAECHLNPIILPLWHVGEPGDGDRE
::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VCRGDGVYQKGMDFILEKLNHGDWVHIFPEGIGRLIAECHLNPIILPLWHVG--------
130 140 150 160 170
160 170 180 190 200 210
pF1KB8 MASGVGGLGLPLVPGCPAPPHVWPSVHCAAGMNDVLPNSPPYFPRFGQKITVLIGKPFSA
:::::::::::::::::::::::::::::
CCDS35 -------------------------------MNDVLPNSPPYFPRFGQKITVLIGKPFSA
180 190 200
220 230 240 250 260
pF1KB8 LPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQPGR
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LPVLERLRAENKSAVEMRKALTDFIQEEFQHLKTQAEQLHNHLQPGR
210 220 230 240
>>CCDS14750.1 TAZ gene_id:6901|Hs108|chrX (278 aa)
initn: 1091 init1: 516 opt: 539 Z-score: 587.9 bits: 116.5 E(32554): 2e-26
Smith-Waterman score: 1244; 66.2% identity (67.2% similar) in 317 aa overlap (1-262:1-278)
10 20 30 40
pF1KB8 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTSEWAQ------------AEAGPPG
::::::::::::::::::::::::::::::::::::. . : :.
CCDS14 MPLHVKWPFPAVPPLTWTLASSVVMGLVGTYSCFWTKYMNHLTVHNREVLYELIEKRGPA
10 20 30 40 50 60
50 60 70 80 90
pF1KB8 YP---------C---PA-GGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
: : : :::::::::::::::::::::::::::::::::::::::::
CCDS14 TPLITVSNHQSCMDDPHLWGILKLRHIWNLKLMRWTPAAADICFTKELHSHFFSLGKCVP
70 80 90 100 110 120
100 110 120
pF1KB8 VCRG------------------------------DGVYQKGMDFILEKLNHGDWVHIFPE
:::: ::::::::::::::::::::::::::
CCDS14 VCRGAEFFQAENEGKGVLDTGRHMPGAGKRREKGDGVYQKGMDFILEKLNHGDWVHIFPE
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 GIGRLIAECHLNPIILPLWHVGEPGDGDREMASGVGGLGLPLVPGCPAPPHVWPSVHCAA
::::::::::::::::::::::
CCDS14 GIGRLIAECHLNPIILPLWHVG--------------------------------------
190 200
190 200 210 220 230 240
pF1KB8 GMNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 -MNDVLPNSPPYFPRFGQKITVLIGKPFSALPVLERLRAENKSAVEMRKALTDFIQEEFQ
210 220 230 240 250 260
250 260
pF1KB8 HLKTQAEQLHNHLQPGR
:::::::::::::::::
CCDS14 HLKTQAEQLHNHLQPGR
270
262 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 16:18:59 2016 done: Mon Nov 7 16:19:00 2016
Total Scan time: 2.390 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]