FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3325, 921 aa 1>>>pF1KE3325 921 - 921 aa - 921 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 13.3235+/-0.00111; mu= -15.0355+/- 0.067 mean_var=460.1184+/-99.849, 0's: 0 Z-trim(115.2): 179 B-trim: 0 in 0/52 Lambda= 0.059791 statistics sampled from 15551 (15729) to 15551 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.483), width: 16 Scan time: 5.010 The best scores are: opt bits E(32554) CCDS61250.1 KSR2 gene_id:283455|Hs108|chr12 ( 921) 6375 564.9 2.4e-160 CCDS58532.1 KSR1 gene_id:8844|Hs108|chr17 ( 762) 1701 161.7 4.8e-39 >>CCDS61250.1 KSR2 gene_id:283455|Hs108|chr12 (921 aa) initn: 6375 init1: 6375 opt: 6375 Z-score: 2992.3 bits: 564.9 E(32554): 2.4e-160 Smith-Waterman score: 6375; 100.0% identity (100.0% similar) in 921 aa overlap (1-921:1-921) 10 20 30 40 50 60 pF1KE3 MIDLSISNLEGLRTKCATSNDLTQKEIRTLESKLVKYFSRQLSCKKKVALQERNAELDGF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 MIDLSISNLEGLRTKCATSNDLTQKEIRTLESKLVKYFSRQLSCKKKVALQERNAELDGF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 PQLRHWFRIVDVRKEVLEEISPGQLSLEDLLEMTDEQVCETVEKYGANREECARLNASLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 PQLRHWFRIVDVRKEVLEEISPGQLSLEDLLEMTDEQVCETVEKYGANREECARLNASLS 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 CLRNVHMSGGNLSKQDWTIQWPTTETGKENNPVCPPEPTPWIRTHLSQSPRVPSKCVQHY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 CLRNVHMSGGNLSKQDWTIQWPTTETGKENNPVCPPEPTPWIRTHLSQSPRVPSKCVQHY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 CHTSPTPGAPVYTHVDRLTVDAYPGLCPPPPLESGHRSLPPSPRQRHAVRTPPRTPNIVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 CHTSPTPGAPVYTHVDRLTVDAYPGLCPPPPLESGHRSLPPSPRQRHAVRTPPRTPNIVT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 TVTPPGTPPMRKKNKLKPPGTPPPSSRKLIHLIPGFTALHRSKSHEFQLGHRVDEAHTPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 TVTPPGTPPMRKKNKLKPPGTPPPSSRKLIHLIPGFTALHRSKSHEFQLGHRVDEAHTPK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 AKKKSKPLNLKIHSSVGSCENIPSQQRSPLLSERSLRSFFVGHAPFLPSTPPVHTEANFS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 AKKKSKPLNLKIHSSVGSCENIPSQQRSPLLSERSLRSFFVGHAPFLPSTPPVHTEANFS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 ANTLSVPRWSPQIPRRDLGNSIKHRFSTKYWMSQTCTVCGKGMLFGLKCKNCKLKCHNKC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 ANTLSVPRWSPQIPRRDLGNSIKHRFSTKYWMSQTCTVCGKGMLFGLKCKNCKLKCHNKC 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 TKEAPPCHLLIIHRGDPARLVRTESVPCDINNPLRKPPRYSDLHISQTLPKTNKINKDHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 TKEAPPCHLLIIHRGDPARLVRTESVPCDINNPLRKPPRYSDLHISQTLPKTNKINKDHI 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE3 PVPYQPDSSSNPSSTTSSTPSSPAPPLPPSATPPSPLHPSPQCTRQQKNFNLPASHYYKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 PVPYQPDSSSNPSSTTSSTPSSPAPPLPPSATPPSPLHPSPQCTRQQKNFNLPASHYYKY 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE3 KQQFIFPDVVPVPETPTRAPQVILHPVTSNPILEGNPLLQIEVEPTSENEEVHDEAEESE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 KQQFIFPDVVPVPETPTRAPQVILHPVTSNPILEGNPLLQIEVEPTSENEEVHDEAEESE 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE3 DDFEEMNLSLLSARSFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 DDFEEMNLSLLSARSFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEV 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE3 AIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 AIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYS 670 680 690 700 710 720 730 740 750 760 770 780 pF1KE3 VVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVVITDFGLFSI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 VVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKVVITDFGLFSI 730 740 750 760 770 780 790 800 810 820 830 840 pF1KE3 SGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 SGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHA 790 800 810 820 830 840 850 860 870 880 890 900 pF1KE3 REWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS61 REWPFKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQEERPTFTKLMDMLE 850 860 870 880 890 900 910 920 pF1KE3 KLPKRNRRLSHPGHFWKSAEL ::::::::::::::::::::: CCDS61 KLPKRNRRLSHPGHFWKSAEL 910 920 >>CCDS58532.1 KSR1 gene_id:8844|Hs108|chr17 (762 aa) initn: 2153 init1: 1305 opt: 1701 Z-score: 814.5 bits: 161.7 E(32554): 4.8e-39 Smith-Waterman score: 2449; 48.7% identity (69.6% similar) in 859 aa overlap (93-921:1-762) 70 80 90 100 110 120 pF1KE3 LRHWFRIVDVRKEVLEEISPGQLSLEDLLEMTDEQVCETVEKYGANREECARLNASLSCL :.. .: ::... ::. .::.::. .:.:: CCDS58 MNEAKVKETLRRCGASGDECGRLQYALTCL 10 20 30 130 140 150 160 170 180 pF1KE3 RNVHMSGGNLSKQDWTIQWPTTETGKENNPVCPPEPTPWIRTHLSQSPRVPSKCVQHYCH :.: ::. :.: . : . .. .:.. : . : : :. . . . CCDS58 RKVTGLGGE-HKEDSS--WSSLDARRESGS--GPSTDTLSAASLPWPP--GSSQLGRAGN 40 50 60 70 80 190 200 210 220 230 240 pF1KE3 TSPTPGAPVYTHVDRLTVDAYPGLCPPPPLESGHRSLPPSPRQRHAV-RTPPRTPNIVTT .. : . ..:.: :. : : : ..: . :: : ::. . . CCDS58 SAQGPRS--------ISVSALPASDSPTP--SFSEGLSDTCIPLHASGRLTPRA--LHSF 90 100 110 120 130 250 260 270 280 290 300 pF1KE3 VTPPGTPPMRKKNKLKPPGTPPPSSRKLIHLIPGFTALHRSKSHEFQLGHRVDEAHTPKA .::: :: .:...::::: :::: :::...:.:.: .: :::::: :::.:.:.. CCDS58 ITPPTTPQLRRHTKLKPPRTPPPPSRKVFQLLPSFPTLTRSKSHESQLGNRIDDVS---- 140 150 160 170 180 310 320 330 340 350 360 pF1KE3 KKKSKPLNLKIHSSVGSCENIPSQQRSPLLSERSLRSFFVGHAPFLPSTPPVHTEANFSA :.: : ..:. CCDS58 ---------------------------------SMR-FDLSHG----------------- 190 370 380 390 400 410 420 pF1KE3 NTLSVPRWSPQIPRRDLGNSIKHRFSTKYWMSQTCTVCGKGMLFGLKCKNCKLKCHNKCT :::. :::.: :. :::::: :.::.: :: :.:.::.:::.:.:::::::: CCDS58 --------SPQMVRRDIGLSVTHRFSTKSWLSQVCHVCQKSMIFGVKCKHCRLKCHNKCT 200 210 220 230 240 430 440 450 460 470 480 pF1KE3 KEAPPCHLLIIHRGDP-ARLVRTESVPCDINNPLRKPPRYSDLHISQTLPKTNKINKDHI :::: :.. .. : .:: :::::: :::::. : .. :.. ::::. .:.: CCDS58 KEAPACRISFL----PLTRLRRTESVPSDINNPV---DRAAEPHFG-TLPKA-LTKKEHP 250 260 270 280 290 490 500 510 520 530 pF1KE3 PVPYQPDSSSNPSSTTSSTPSSPAPPLPPSATPPS---PLHPSPQCTRQQKNFNLPASHY :. . ::::::::::::::::::: .: :..: : : .::: .... ::.::... CCDS58 PAMNHLDSSSNPSSTTSSTPSSPAP-FPTSSNPSSATTPPNPSPG--QRDSRFNFPAAYF 300 310 320 330 340 350 540 550 560 570 580 pF1KE3 YKYKQQFIFPDVVP----------VPETPTRAPQVILHPVTSNPILEGNPLLQIEVEPTS ...:::::: :: . :. . : . . :. :. ... .: . CCDS58 IHHRQQFIFP--VPSAGHCWKCLLIAESLKENAFNISAFAHAAPLPEAADGTRLDDQPKA 360 370 380 390 400 410 590 600 610 620 630 pF1KE3 ENEEVHD-EAEE-------SEDDFEEMNLSLLSARS-----FPRKASQTSIFLQEWDIPF . :.:. :::: .::: .:.. .: :.: . :::::::..:::::::: CCDS58 DVLEAHEAEAEEPEAGKSEAEDDEDEVD-DLPSSRRPWRGPISRKASQTSVYLQEWDIPF 420 430 440 450 460 470 640 650 660 670 680 690 pF1KE3 EQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVV ::.:.:: ::.::.:.:..:::::::::::.... :.:.:: ::.::: :::::::::: CCDS58 EQVELGEPIGQGRWGRVHRGRWHGEVAIRLLEMDGHNQDHLKLFKKEVMNYRQTRHENVV 480 490 500 510 520 530 700 710 720 730 740 750 pF1KE3 LFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGIL :::::::.:::::::::.::::::.: ::: : ::.::::::::::.:::::::::::. CCDS58 LFMGACMNPPHLAIITSFCKGRTLHSFVRDPKTSLDINKTRQIAQEIIKGMGYLHAKGIV 540 550 560 570 580 590 760 770 780 790 800 810 pF1KE3 HKDLKSKNVFYDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPD ::::::::::::::::::::::::.::::.. ::::..:.... :::.:::::.:...: CCDS58 HKDLKSKNVFYDNGKVVITDFGLFGISGVVREGRRENQLKLSHDWLCYLAPEIVREMTPG 600 610 620 630 640 650 820 830 840 850 860 870 pF1KE3 TEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTG--MKPNLSQIGMGK .::.::::: .::.:.::.::::.::.::.:.: ::: :::.:.: :: :.....:: CCDS58 KDEDQLPFSKAADVYAFGTVWYELQARDWPLKNQAAEASIWQIGSGEGMKRVLTSVSLGK 660 670 680 690 700 710 880 890 900 910 920 pF1KE3 EISDILLFCWAFEQEERPTFTKLMDMLEKLPKRNRRLSHPGHFWKSAEL :.:.:: ::::. .:::.:. :::::::::: :::::::::::::::: CCDS58 EVSEILSACWAFDLQERPSFSLLMDMLEKLPKLNRRLSHPGHFWKSAEL 720 730 740 750 760 921 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:12:14 2016 done: Mon Nov 7 16:12:14 2016 Total Scan time: 5.010 Total Display time: 0.040 Function used was FASTA [36.3.4 Apr, 2011]