(Circular) (Six-base) MAPSORT of: pFN21AE2056.seq Check: 2692 from: 1 to: 6781 pFN21AE2056 6781 bp With 182 enzymes: SgfI * July 6, 2012 17:37 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 3507 3877 3507 Size: 370 6411 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3735 4591 278 Size: 53 83 186 936 2199 856 2468 Fragments arranged by size: 2468 2199 936 856 186 83 53 AccI GT'mk_AC Cuts at: 1937 4124 1937 Size: 2187 4594 Acc65I G'GTAC_C Cuts at: 4102 4102 Size: 6781 AclI AA'CG_TT Cuts at: 1563 4908 5281 1563 Size: 3345 373 3063 Fragments arranged by size: 3345 3063 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 4053 4844 6228 6496 1632 Size: 2421 791 1384 268 1917 Fragments arranged by size: 2421 1917 1384 791 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6584 AflIII A'CryG_T Cuts at: 1203 5680 6657 1203 Size: 4477 977 1327 Fragments arranged by size: 4477 1327 977 AgeI A'CCGG_T Cuts at: 5612 5612 Size: 6781 AhdI GACnn_n'nnGTC Cuts at: 2311 2479 5510 2311 Size: 168 3031 3582 Fragments arranged by size: 3582 3031 168 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6781 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2633 3293 1184 Size: 1449 660 4672 Fragments arranged by size: 4672 1449 660 AlwNI CAG_nnn'CTG Cuts at: 2418 3877 3950 4524 6096 2418 Size: 1459 73 574 1572 3103 Fragments arranged by size: 3103 1572 1459 574 73 ApaI G_GGCC'C Cuts at: 2221 2718 2221 Size: 497 6284 ApaLI G'TGCA_C Cuts at: 4838 5994 4838 Size: 1156 5625 ApoI r'AATT_y Cuts at: 1493 3032 3165 3239 4090 4316 4468 6577 1493 Size: 1539 133 74 851 226 152 2109 1697 Fragments arranged by size: 2109 1697 1539 851 226 152 133 74 AseI AT'TA_AT Cuts at: 160 1032 5335 160 Size: 872 4303 1606 Fragments arranged by size: 4303 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6781 AvaI C'yCGr_G Cuts at: 1870 1943 2535 2961 4106 1870 Size: 73 592 426 1145 4545 Fragments arranged by size: 4545 1145 592 426 73 BamHI G'GATC_C Cuts at: 4111 4478 4111 Size: 367 6414 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2120 2609 3495 3889 3959 Size: 325 217 627 333 489 886 394 70 Cuts at: 3959 4102 5557 618 Size: 143 1455 1842 Fragments arranged by size: 1842 1455 886 627 489 394 333 325 217 143 70 BanII G_rGCy'C Cuts at: 1391 2221 2378 2549 2661 2718 4100 1391 Size: 830 157 171 112 57 1382 4072 Fragments arranged by size: 4072 1382 830 171 157 112 57 BbeI G_GCGC'C Cuts at: 2124 3963 2124 Size: 1839 4942 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 5810 BbvCI CC'TCA_GC Cuts at: 3816 3816 Size: 6781 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4972 5006 1903 Size: 34 3035 34 3678 Fragments arranged by size: 3678 3035 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4673 5883 4673 Size: 1210 5571 BclI T'GATC_A Cuts at: 1548 1548 Size: 6781 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2189 5392 136 Size: 107 122 71 631 605 517 3203 1525 Fragments arranged by size: 3203 1525 631 605 517 122 107 71 BglII A'GATC_T Cuts at: 6776 6776 Size: 6781 BlpI GC'TnA_GC Cuts at: 4198 4198 Size: 6781 Bme1580I G_kGCm'C Cuts at: 1790 2221 2640 2718 3894 3994 4842 5998 1790 Size: 431 419 78 1176 100 848 1156 2573 Fragments arranged by size: 2573 1176 1156 848 431 419 100 78 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 6781 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2746 4512 5470 Size: 416 53 83 399 24 1329 1766 958 Cuts at: 5470 442 Size: 1753 Fragments arranged by size: 1766 1753 1329 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6781 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2563 2563 Size: 6781 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2395 3287 3473 3777 5441 1239 Size: 1156 892 186 304 1664 2579 Fragments arranged by size: 2579 1664 1156 892 304 186 Bpu10I CC'TnA_GC Cuts at: 3019 3816 3019 Size: 797 5984 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3608 3846 4906 5771 6069 3608 Size: 238 1060 865 298 4320 Fragments arranged by size: 4320 1060 865 298 238 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2520 3245 5444 882 Size: 617 1021 725 2199 2219 Fragments arranged by size: 2219 2199 1021 725 617 BsaAI yAC'GTr Cuts at: 493 1204 2692 4572 493 Size: 711 1488 1880 2702 Fragments arranged by size: 2702 1880 1488 711 BsaBI GATnn'nnATC Cuts at: 2859 6775 2859 Size: 3916 2865 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2121 3346 3732 3918 Size: 53 83 186 936 588 1225 386 186 Cuts at: 3918 3960 4588 4970 5605 275 Size: 42 628 382 635 1451 Fragments arranged by size: 1451 1225 936 635 628 588 386 382 186 186 83 53 42 BsaWI w'CCGG_w Cuts at: 2595 5214 5612 5886 6033 6444 2595 Size: 2619 398 274 147 411 2932 Fragments arranged by size: 2932 2619 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 3488 3518 1178 Size: 30 165 30 2085 30 4441 Fragments arranged by size: 4441 2085 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2887 2954 3090 3476 3731 1186 Size: 1701 67 136 386 255 4236 Fragments arranged by size: 4236 1701 386 255 136 67 BseYI C'CCAG_C Cuts at: 2167 2447 2530 2723 4015 5984 6480 2167 Size: 280 83 193 1292 1969 496 2468 Fragments arranged by size: 2468 1969 1292 496 280 193 83 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 3174 3456 3485 1163 Size: 573 1438 282 29 4459 Fragments arranged by size: 4459 1438 573 282 29 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2214 2488 4231 4992 6020 1540 Size: 275 186 213 274 1743 761 1028 2301 Fragments arranged by size: 2301 1743 1028 761 275 274 213 186 BsiHKAI G_wGCw'C Cuts at: 2378 2433 3417 4842 4927 5998 2378 Size: 55 984 1425 85 1071 3161 Fragments arranged by size: 3161 1425 1071 984 85 55 BsmI GAATG_Cn' Cuts at: 2525 4292 4385 2525 Size: 1767 93 4921 Fragments arranged by size: 4921 1767 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2221 2378 2433 2549 2640 2661 2718 Size: 399 431 157 55 116 91 21 57 Cuts at: 2718 3417 3894 3994 4100 4842 4927 5998 1391 Size: 699 477 100 106 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 699 477 431 399 157 116 106 100 91 85 57 55 21 BspEI T'CCGG_A Cuts at: 6444 6444 Size: 6781 BspHI T'CATG_A Cuts at: 4670 6400 4670 Size: 1730 5051 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2056 3507 3519 3877 4136 844 Size: 1212 1451 12 358 259 3489 Fragments arranged by size: 3489 1451 1212 358 259 12 BsrBI CCG'CTC Cuts at: 1394 1823 2340 2542 2835 3018 3791 4668 1394 Size: 429 517 202 293 183 773 877 3507 Fragments arranged by size: 3507 877 773 517 429 293 202 183 BsrDI GCAATG_nn' Cuts at: 65 1248 2280 2497 5276 5450 65 Size: 1183 1032 217 2779 174 1396 Fragments arranged by size: 2779 1396 1183 1032 217 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2727 3811 3848 5425 5612 1700 Size: 110 917 1084 37 1577 187 2869 Fragments arranged by size: 2869 1577 1084 917 187 110 37 BsrGI T'GTAC_A Cuts at: 96 96 Size: 6781 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6781 BssSI C'ACGA_G Cuts at: 2173 4841 5853 2173 Size: 2668 1012 3101 Fragments arranged by size: 3101 2668 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 3989 794 Size: 3195 3586 BstBI TT'CG_AA Cuts at: 5585 5585 Size: 6781 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6781 BstXI CCAn_nnnn'nTGG Cuts at: 2175 2233 2175 Size: 58 6723 BstYI r'GATC_y Cuts at: 1972 3216 3388 4111 4478 4863 4880 6332 6418 Size: 1244 172 723 367 385 17 1452 86 Cuts at: 6418 6430 6776 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 1244 723 385 367 346 172 86 17 12 Bsu36I CC'TnA_GG Cuts at: 3714 3714 Size: 6781 BtgI C'CryG_G Cuts at: 513 1065 2004 2757 3291 3507 3726 3831 4023 Size: 552 939 753 534 216 219 105 192 Cuts at: 4023 513 Size: 3271 Fragments arranged by size: 3271 939 753 552 534 219 216 192 105 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 6042 Fragments arranged by size: 6042 683 56 BtsI GCAGTG_nn' Cuts at: 3442 3765 4297 5091 5111 3442 Size: 323 532 794 20 5112 Fragments arranged by size: 5112 794 532 323 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6781 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6746 DraI TTT'AAA Cuts at: 4085 4085 Size: 6781 DraIII CAC_nnn'GTG Cuts at: 3508 3508 Size: 6781 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 5788 809 Size: 507 4472 1802 Fragments arranged by size: 4472 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2082 2211 2729 Size: 54 1425 50 275 18 252 129 518 Cuts at: 2729 2830 3406 3723 4228 5117 6746 8 Size: 101 576 317 505 889 1629 43 Fragments arranged by size: 1629 1425 889 576 518 505 317 275 252 129 101 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2211 4228 1537 Size: 275 399 2017 4090 Fragments arranged by size: 4090 2017 399 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2750 3104 3127 3207 3876 4711 1353 Size: 1397 354 23 80 669 835 3423 Fragments arranged by size: 3423 1397 835 669 354 80 23 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 5368 5742 5888 387 Size: 1064 138 3779 374 146 1280 Fragments arranged by size: 3779 1280 1064 374 146 138 EcoICRI GAG'CTC Cuts at: 2376 2376 Size: 6781 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2395 3287 3473 3777 4053 4844 5441 Size: 393 763 892 186 304 276 791 597 Cuts at: 5441 6228 6496 1239 Size: 787 268 1524 Fragments arranged by size: 1524 892 791 787 763 597 393 304 276 268 186 EcoNI CCTnn'n_nnAGG Cuts at: 3396 3396 Size: 6781 EcoO109I rG'GnC_Cy Cuts at: 2217 2218 2415 2704 2714 2715 3634 3827 2217 Size: 1 197 289 10 1 919 193 5171 Fragments arranged by size: 5171 919 289 197 193 10 1 1 EcoRI G'AATT_C Cuts at: 3032 3165 4090 4468 3032 Size: 133 925 378 5345 Fragments arranged by size: 5345 925 378 133 FspI TGC'GCA Cuts at: 2621 5287 2621 Size: 2666 4115 HaeII r_GCGC'y Cuts at: 1678 2124 3788 3963 5928 1678 Size: 446 1664 175 1965 2531 Fragments arranged by size: 2531 1965 1664 446 175 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2297 2329 2465 2497 2648 Size: 32 135 32 725 32 136 32 151 Cuts at: 2648 2680 2839 2871 3002 3034 4040 4072 5422 Size: 32 159 32 131 32 1006 32 1350 Cuts at: 5422 5454 5496 5528 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1350 1006 725 159 151 136 135 131 42 32 32 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2968 4125 4371 669 Size: 988 281 1030 1157 246 3079 Fragments arranged by size: 3079 1157 1030 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6781 HpaI GTT'AAC Cuts at: 4371 4371 Size: 6781 KasI G'GCGC_C Cuts at: 2120 3959 2120 Size: 1839 4942 KpnI G_GTAC'C Cuts at: 4106 4106 Size: 6781 MfeI C'AATT_G Cuts at: 4380 4380 Size: 6781 MluI A'CGCG_T Cuts at: 6657 6657 Size: 6781 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2295 2508 2953 5895 6079 1305 Size: 990 213 445 2942 184 2007 Fragments arranged by size: 2942 2007 990 445 213 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2084 3408 10 Size: 54 1425 343 252 1324 3383 Fragments arranged by size: 3383 1425 1324 343 252 54 MslI CAynn'nnrTG Cuts at: 518 1166 2231 2615 4739 5098 5257 518 Size: 648 1065 384 2124 359 159 2042 Fragments arranged by size: 2124 2042 1065 648 384 359 159 MspA1I CmG'CkG Cuts at: 1606 2088 2645 3005 3493 3728 3804 3842 3874 Size: 482 557 360 488 235 76 38 32 Cuts at: 3874 4019 4025 4197 4874 6022 6267 1606 Size: 145 6 172 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 557 488 482 360 245 235 172 145 76 38 32 6 NaeI GCC'GGC Cuts at: 2729 3813 2729 Size: 1084 5697 NarI GG'CG_CC Cuts at: 2121 3960 2121 Size: 1839 4942 NcoI C'CATG_G Cuts at: 513 1065 2004 2757 513 Size: 552 939 753 4537 Fragments arranged by size: 4537 939 753 552 NdeI CA'TA_TG Cuts at: 387 2068 387 Size: 1681 5100 NgoMIV G'CCGG_C Cuts at: 2727 3811 2727 Size: 1084 5697 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6781 NotI GC'GGCC_GC Cuts at: 4228 4228 Size: 6781 NspI r_CATG'y Cuts at: 1132 1229 2788 3463 4139 5684 1132 Size: 97 1559 675 676 1545 2229 Fragments arranged by size: 2229 1559 1545 676 675 97 PasI CC'CwG_GG Cuts at: 1348 2059 1348 Size: 711 6070 PciI A'CATG_T Cuts at: 5680 5680 Size: 6781 PflMI CCAn_nnn'nTGG Cuts at: 1108 2302 2673 2758 1108 Size: 1194 371 85 5131 Fragments arranged by size: 5131 1194 371 85 PfoI T'CCnGG_A Cuts at: 2589 3303 2589 Size: 714 6067 PmeI GTTT'AAAC Cuts at: 4085 4085 Size: 6781 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4850 4882 6363 6395 4850 Size: 32 1481 32 5236 Fragments arranged by size: 5236 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 3634 3634 Size: 6781 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6781 PsiI TTA'TAA Cuts at: 4351 4351 Size: 6781 PspOMI G'GGCC_C Cuts at: 2217 2714 2217 Size: 497 6284 PstI C_TGCA'G Cuts at: 830 3946 4133 830 Size: 3116 187 3478 Fragments arranged by size: 3478 3116 187 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6781 PvuII CAG'CTG Cuts at: 2088 3005 3874 4019 2088 Size: 917 869 145 4850 Fragments arranged by size: 4850 917 869 145 SacI G_AGCT'C Cuts at: 2378 2378 Size: 6781 SacII CC_GC'GG Cuts at: 3729 4026 3729 Size: 297 6484 SalI G'TCGA_C Cuts at: 1936 4123 1936 Size: 2187 4594 SapI GCTCTTCn'nnn_ Cuts at: 3876 3876 Size: 6781 SbfI CC_TGCA'GG Cuts at: 4133 4133 Size: 6781 ScaI AGT'ACT Cuts at: 5029 6741 5029 Size: 1712 5069 SfcI C'TryA_G Cuts at: 826 1045 2155 2452 3942 4129 5264 5945 6136 Size: 219 1110 297 1490 187 1135 681 191 Cuts at: 6136 826 Size: 1471 Fragments arranged by size: 1490 1471 1135 1110 681 297 219 191 187 SfiI GGCCn_nnn'nGGCC Cuts at: 2189 2189 Size: 6781 SfoI GGC'GCC Cuts at: 2122 3961 2122 Size: 1839 4942 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6781 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6781 SmaI CCC'GGG Cuts at: 1872 2537 2963 4108 1872 Size: 665 426 1145 4545 Fragments arranged by size: 4545 1145 665 426 SmlI C'TyrA_G Cuts at: 820 1017 1943 3623 3861 4885 5786 6048 820 Size: 197 926 1680 238 1024 901 262 1553 Fragments arranged by size: 1680 1553 1024 926 901 262 238 197 SnaBI TAC'GTA Cuts at: 493 4572 493 Size: 4079 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6781 SphI G_CATG'C Cuts at: 1132 2788 4139 1132 Size: 1656 1351 3774 Fragments arranged by size: 3774 1656 1351 SspI AAT'ATT Cuts at: 5 52 4705 5 Size: 47 4653 2081 Fragments arranged by size: 4653 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 6781 StyI C'CwwG_G Cuts at: 513 1065 2004 2187 2316 2757 3924 4220 513 Size: 552 939 183 129 441 1167 296 3074 Fragments arranged by size: 3074 1167 939 552 441 296 183 129 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2072 2684 4808 4825 4978 5163 5608 Size: 1255 492 612 2124 17 153 185 445 Cuts at: 5608 325 Size: 1498 Fragments arranged by size: 2124 1498 1255 612 492 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2511 5027 6739 Size: 274 80 33 51 1443 534 2516 1712 Cuts at: 6739 96 Size: 138 Fragments arranged by size: 2516 1712 1443 534 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2064 2096 3488 3520 6741 6773 2064 Size: 32 1392 32 3221 32 2072 Fragments arranged by size: 3221 2072 1392 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6781 XbaI T'CTAG_A Cuts at: 4117 4117 Size: 6781 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2066 3565 2066 Size: 1499 5282 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6781 XmaI C'CCGG_G Cuts at: 1870 2535 2961 4106 1870 Size: 665 426 1145 4545 Fragments arranged by size: 4545 1145 665 426 XmnI GAAnn'nnTTC Cuts at: 2924 4910 2924 Size: 1986 4795 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3733 4589 276 Size: 53 83 186 936 2199 856 2468 Fragments arranged by size: 2468 2199 936 856 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PspOMI PstI PvuI PvuII SacI SacII SalI SapI SbfI ScaI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BfrBI BsiWI BsmBI BstZ17I EcoRV FalI FseI FspAI NruI NsiI PacI PmlI PspXI PsrI RsrII SanDI SexAI SrfI SwaI