FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9428, 518 aa 1>>>pF1KB9428 518 - 518 aa - 518 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 9.6217+/-0.000978; mu= -0.4075+/- 0.057 mean_var=373.6875+/-81.825, 0's: 0 Z-trim(114.0): 454 B-trim: 0 in 0/52 Lambda= 0.066347 statistics sampled from 14047 (14611) to 14047 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.77), E-opt: 0.2 (0.449), width: 16 Scan time: 3.890 The best scores are: opt bits E(32554) CCDS9628.1 RIPK3 gene_id:11035|Hs108|chr14 ( 518) 3572 356.2 5.1e-98 >>CCDS9628.1 RIPK3 gene_id:11035|Hs108|chr14 (518 aa) initn: 3572 init1: 3572 opt: 3572 Z-score: 1873.2 bits: 356.2 E(32554): 5.1e-98 Smith-Waterman score: 3572; 100.0% identity (100.0% similar) in 518 aa overlap (1-518:1-518) 10 20 30 40 50 60 pF1KB9 MSCVKLWPSGAPAPLVSIEELENQELVGKGGFGTVFRAQHRKWGYDVAVKIVNSKAISRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 MSCVKLWPSGAPAPLVSIEELENQELVGKGGFGTVFRAQHRKWGYDVAVKIVNSKAISRE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 VKAMASLDNEFVLRLEGVIEKVNWDQDPKPALVTKFMENGSLSGLLQSQCPRPWPLLCRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 VKAMASLDNEFVLRLEGVIEKVNWDQDPKPALVTKFMENGSLSGLLQSQCPRPWPLLCRL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB9 LKEVVLGMFYLHDQNPVLLHRDLKPSNVLLDPELHVKLADFGLSTFQGGSQSGTGSGEPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 LKEVVLGMFYLHDQNPVLLHRDLKPSNVLLDPELHVKLADFGLSTFQGGSQSGTGSGEPG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB9 GTLGYLAPELFVNVNRKASTASDVYSFGILMWAVLAGREVELPTEPSLVYEAVCNRQNRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 GTLGYLAPELFVNVNRKASTASDVYSFGILMWAVLAGREVELPTEPSLVYEAVCNRQNRP 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB9 SLAELPQAGPETPGLEGLKELMQLCWSSEPKDRPSFQECLPKTDEVFQMVENNMNAAVST :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 SLAELPQAGPETPGLEGLKELMQLCWSSEPKDRPSFQECLPKTDEVFQMVENNMNAAVST 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB9 VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 VKDFLSQLRSSNRRFSIPESGQGGTEMDGFRRTIENQHSRNDVMVSEWLNKLNLEEPPSS 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB9 VPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 VPKKCPSLTKRSRAQEEQVPQAWTAGTSSDSMAQPPQTPETSTFRNQMPSPTSTGTPSPG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB9 PRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS96 PRGNQGAERQGMNWSCRTPEPNPVTGRPLVNIYNCSGVQVGDNNYLTMQQTTALPTWGLA 430 440 450 460 470 480 490 500 510 pF1KB9 PSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK :::::::::::::::::::::::::::::::::::::: CCDS96 PSGKGRGLQHPPPVGSQEGPKDPEAWSRPQGWYNHSGK 490 500 510 518 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 16:05:02 2016 done: Mon Nov 7 16:05:03 2016 Total Scan time: 3.890 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]