FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2222, 246 aa 1>>>pF1KE2222 246 - 246 aa - 246 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1400+/-0.000326; mu= 15.7183+/- 0.020 mean_var=70.8518+/-14.870, 0's: 0 Z-trim(115.9): 18 B-trim: 1132 in 1/53 Lambda= 0.152370 statistics sampled from 26644 (26653) to 26644 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.313), width: 16 Scan time: 6.840 The best scores are: opt bits E(85289) NP_037525 (OMIM: 606906) rRNA methyltransferase 2, ( 246) 1657 373.0 2.7e-103 NP_803188 (OMIM: 300499,309549) putative tRNA (cyt ( 327) 397 96.1 8.2e-20 XP_005272652 (OMIM: 300499,309549) PREDICTED: puta ( 327) 397 96.1 8.2e-20 NP_036412 (OMIM: 300499,309549) putative tRNA (cyt ( 329) 397 96.1 8.2e-20 XP_016884871 (OMIM: 300499,309549) PREDICTED: puta ( 335) 397 96.1 8.4e-20 XP_011542197 (OMIM: 300499,309549) PREDICTED: puta ( 335) 397 96.1 8.4e-20 XP_011542196 (OMIM: 300499,309549) PREDICTED: puta ( 337) 397 96.1 8.4e-20 XP_011542195 (OMIM: 300499,309549) PREDICTED: puta ( 337) 397 96.1 8.4e-20 >>NP_037525 (OMIM: 606906) rRNA methyltransferase 2, mit (246 aa) initn: 1657 init1: 1657 opt: 1657 Z-score: 1975.3 bits: 373.0 E(85289): 2.7e-103 Smith-Waterman score: 1657; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE2 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_037 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 190 200 210 220 230 240 pF1KE2 KGTVKQ :::::: NP_037 KGTVKQ >>NP_803188 (OMIM: 300499,309549) putative tRNA (cytidin (327 aa) initn: 363 init1: 178 opt: 397 Z-score: 476.7 bits: 96.1 E(85289): 8.2e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... NP_803 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . NP_803 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: NP_803 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . NP_803 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q NP_803 DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP 210 220 230 240 250 260 >>XP_005272652 (OMIM: 300499,309549) PREDICTED: putative (327 aa) initn: 363 init1: 178 opt: 397 Z-score: 476.7 bits: 96.1 E(85289): 8.2e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... XP_005 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . XP_005 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: XP_005 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . XP_005 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q XP_005 DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP 210 220 230 240 250 260 >>NP_036412 (OMIM: 300499,309549) putative tRNA (cytidin (329 aa) initn: 363 init1: 178 opt: 397 Z-score: 476.6 bits: 96.1 E(85289): 8.2e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... NP_036 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . NP_036 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: NP_036 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . NP_036 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q NP_036 DLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQ 210 220 230 240 250 260 >>XP_016884871 (OMIM: 300499,309549) PREDICTED: putative (335 aa) initn: 363 init1: 178 opt: 397 Z-score: 476.5 bits: 96.1 E(85289): 8.4e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... XP_016 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . XP_016 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: XP_016 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . XP_016 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q XP_016 DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP 210 220 230 240 250 260 >>XP_011542197 (OMIM: 300499,309549) PREDICTED: putative (335 aa) initn: 363 init1: 178 opt: 397 Z-score: 476.5 bits: 96.1 E(85289): 8.4e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... XP_011 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . XP_011 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: XP_011 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . XP_011 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q XP_011 DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP 210 220 230 240 250 260 >>XP_011542196 (OMIM: 300499,309549) PREDICTED: putative (337 aa) initn: 363 init1: 178 opt: 397 Z-score: 476.5 bits: 96.1 E(85289): 8.4e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... XP_011 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . XP_011 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: XP_011 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . XP_011 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q XP_011 DLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQ 210 220 230 240 250 260 >>XP_011542195 (OMIM: 300499,309549) PREDICTED: putative (337 aa) initn: 363 init1: 178 opt: 397 Z-score: 476.5 bits: 96.1 E(85289): 8.4e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... XP_011 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . XP_011 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: XP_011 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . XP_011 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q XP_011 DLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQ 210 220 230 240 250 260 246 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:56:45 2016 done: Mon Nov 7 15:56:46 2016 Total Scan time: 6.840 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]