FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2222, 246 aa 1>>>pF1KE2222 246 - 246 aa - 246 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0288+/-0.000766; mu= 10.7331+/- 0.046 mean_var=72.7540+/-14.819, 0's: 0 Z-trim(109.2): 11 B-trim: 367 in 1/51 Lambda= 0.150365 statistics sampled from 10736 (10741) to 10736 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.33), width: 16 Scan time: 2.380 The best scores are: opt bits E(32554) CCDS5328.1 MRM2 gene_id:29960|Hs108|chr7 ( 246) 1657 368.2 2.8e-102 CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX ( 327) 397 94.9 6.8e-20 CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX ( 329) 397 94.9 6.9e-20 >>CCDS5328.1 MRM2 gene_id:29960|Hs108|chr7 (246 aa) initn: 1657 init1: 1657 opt: 1657 Z-score: 1949.8 bits: 368.2 E(32554): 2.8e-102 Smith-Waterman score: 1657; 100.0% identity (100.0% similar) in 246 aa overlap (1-246:1-246) 10 20 30 40 50 60 pF1KE2 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MAGYLKLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 LEVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 GATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TPDILQPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGR 190 200 210 220 230 240 pF1KE2 KGTVKQ :::::: CCDS53 KGTVKQ >>CCDS14295.1 FTSJ1 gene_id:24140|Hs108|chrX (327 aa) initn: 363 init1: 178 opt: 397 Z-score: 470.6 bits: 94.9 E(32554): 6.8e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . CCDS14 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: CCDS14 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . CCDS14 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q CCDS14 DLSKPLLDHSYDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQPP 210 220 230 240 250 260 >>CCDS14294.1 FTSJ1 gene_id:24140|Hs108|chrX (329 aa) initn: 363 init1: 178 opt: 397 Z-score: 470.5 bits: 94.9 E(32554): 6.9e-20 Smith-Waterman score: 397; 33.5% identity (65.6% similar) in 209 aa overlap (36-244:5-206) 10 20 30 40 50 60 pF1KE2 KLVCVSFQRQGFHTVGSRCKNRTGAEHLWLTRHLRDPFVKAAKVESYRCRSAFKLLEVNE .. :: . . :: ...: :::::::.... CCDS14 MGRTSKDKRDVYYRLAKENGWRARSAFKLLQLDK 10 20 30 70 80 90 100 110 120 pF1KE2 RHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFPLEGATFL . :... :..: ::::.:::: ::... :. : :..::: . :: :.. . CCDS14 EFQLFQGVTRAVDLCAAPGSWSQVLSQKIGGQGS------GHVVAVDLQAMAPLPGVVQI 40 50 60 70 80 130 140 150 160 170 180 pF1KE2 CPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDIL .:.:. :...:.. . : ::... : ::..::..:.:. .: :. :... .: CCDS14 -QGDITQLSTAKEIIQHFKGCPADLVVCDGAPDVTGLHDVDEYMQAQLLLAALNIATHVL 90 100 110 120 130 140 190 200 210 220 230 240 pF1KE2 QPGGTFLCKTWAGSQSRRLQRRLTEEFQNVRIIKPEASRKESSEVYFLATQYHGRKGTVK .::: :. : . : . : .: :..: ::..::. : :.. . : .: . CCDS14 KPGGCFVAKIFRGRDVTLLYSQLQVFFSSVLCAKPRSSRNSSIEAFAVCQGYDPPEGFIP 150 160 170 180 190 200 pF1KE2 Q CCDS14 DLSKPLLDHSYDPDFNQLDGPTRIIVPFVTCGDLSSYDSDRSYPLDLEGGSEYKYTPPTQ 210 220 230 240 250 260 246 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:56:45 2016 done: Mon Nov 7 15:56:45 2016 Total Scan time: 2.380 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]