FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2265, 448 aa 1>>>pF1KE2265 448 - 448 aa - 448 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.0063+/-0.000366; mu= 14.1718+/- 0.023 mean_var=78.5046+/-15.331, 0's: 0 Z-trim(114.9): 16 B-trim: 245 in 1/51 Lambda= 0.144753 statistics sampled from 24951 (24961) to 24951 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.293), width: 16 Scan time: 9.430 The best scores are: opt bits E(85289) NP_060426 (OMIM: 611244) tRNA wybutosine-synthesiz ( 448) 3087 654.3 1.9e-187 NP_065861 (OMIM: 611023,616539) tRNA (guanine(37)- ( 509) 153 41.6 0.0059 XP_011535319 (OMIM: 611023,616539) PREDICTED: tRNA ( 536) 153 41.6 0.0062 XP_005267973 (OMIM: 611023,616539) PREDICTED: tRNA ( 537) 153 41.6 0.0062 >>NP_060426 (OMIM: 611244) tRNA wybutosine-synthesizing (448 aa) initn: 3087 init1: 3087 opt: 3087 Z-score: 3486.3 bits: 654.3 E(85289): 1.9e-187 Smith-Waterman score: 3087; 99.8% identity (99.8% similar) in 448 aa overlap (1-448:1-448) 10 20 30 40 50 60 pF1KE2 MRENVVVSNMERESGKPVAVVAVVTEPRFTQRYREYLQRQKLFDTQHRVEKMPDGSVALP ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: NP_060 MRENVVVSNMERESGKPVAVVAVVTEPWFTQRYREYLQRQKLFDTQHRVEKMPDGSVALP 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 VLGETLPEQHLQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEVSRWVEGRGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 VLGETLPEQHLQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEVSRWVEGRGV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 KWSAELEADLPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 KWSAELEADLPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 PDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEVLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 PDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEVLVD 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 LYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE2 NIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEHW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 NIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEHW 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE2 LYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_060 LYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQIL 370 380 390 400 410 420 430 440 pF1KE2 HIQPVKSYAPHVDHIVLDLECCPCPSVG :::::::::::::::::::::::::::: NP_060 HIQPVKSYAPHVDHIVLDLECCPCPSVG 430 440 >>NP_065861 (OMIM: 611023,616539) tRNA (guanine(37)-N1)- (509 aa) initn: 119 init1: 96 opt: 153 Z-score: 174.0 bits: 41.6 E(85289): 0.0059 Smith-Waterman score: 153; 26.2% identity (58.4% similar) in 149 aa overlap (185-332:248-393) 160 170 180 190 200 210 pF1KE2 NLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHV-DNGIRYKFDVT :. . .: :... . .: .:. :.:: . NP_065 FKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFS 220 230 240 250 260 270 220 230 240 250 260 270 pF1KE2 QCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVA . ... ::. :.. : :.:: :..::.: :..: : : : . ::.. NP_065 KVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIP--VAKKNCTVFANDLNPESHKW 280 290 300 310 320 330 280 290 300 310 320 330 pF1KE2 LRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGIL : : ..: : .. .. :.. . :.. . . .. :. :.: : . :. : .: NP_065 LLYNCKLNKVDQKVKVFNLDGKDF-LQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE 340 350 360 370 380 390 340 350 360 370 380 390 pF1KE2 HIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQ NP_065 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRN 400 410 420 430 440 450 >>XP_011535319 (OMIM: 611023,616539) PREDICTED: tRNA (gu (536 aa) initn: 120 init1: 96 opt: 153 Z-score: 173.7 bits: 41.6 E(85289): 0.0062 Smith-Waterman score: 153; 26.2% identity (58.4% similar) in 149 aa overlap (185-332:275-420) 160 170 180 190 200 210 pF1KE2 NLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHV-DNGIRYKFDVT :. . .: :... . .: .:. :.:: . XP_011 FKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFS 250 260 270 280 290 300 220 230 240 250 260 270 pF1KE2 QCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVA . ... ::. :.. : :.:: :..::.: :..: : : : . ::.. XP_011 KVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIP--VAKKNCTVFANDLNPESHKW 310 320 330 340 350 360 280 290 300 310 320 330 pF1KE2 LRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGIL : : ..: : .. .. :.. . :.. . . .. :. :.: : . :. : .: XP_011 LLYNCKLNKVDQKVKVFNLDGKDF-LQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE 370 380 390 400 410 420 340 350 360 370 380 390 pF1KE2 HIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQ XP_011 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRN 430 440 450 460 470 480 >>XP_005267973 (OMIM: 611023,616539) PREDICTED: tRNA (gu (537 aa) initn: 119 init1: 96 opt: 153 Z-score: 173.7 bits: 41.6 E(85289): 0.0062 Smith-Waterman score: 153; 26.2% identity (58.4% similar) in 149 aa overlap (185-332:276-421) 160 170 180 190 200 210 pF1KE2 NLGPELWETVALALGVQRLAKRGRVSPDGTRTPAVTLLLGDHGWVEHV-DNGIRYKFDVT :. . .: :... . .: .:. :.:: . XP_005 FKHLIGQVMIDKNPGITSAVNKINNIDNMYRNFQMEVLSGEQNMMTKVRENNYTYEFDFS 250 260 270 280 290 300 220 230 240 250 260 270 pF1KE2 QCMFSFGNITEKLRVASLSCAGEVLVDLYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVA . ... ::. :.. : :.:: :..::.: :..: : : : . ::.. XP_005 KVYWNPRLSTEHSRITELLKPGDVLFDVFAGVGPFAIP--VAKKNCTVFANDLNPESHKW 310 320 330 340 350 360 280 290 300 310 320 330 pF1KE2 LRNNLEINGVADRCQIHFGDNRKLKLSNIADRVILGLIPSSEEGWPIACQVLRQDAGGIL : : ..: : .. .. :.. . :.. . . .. :. :.: : . :. : .: XP_005 LLYNCKLNKVDQKVKVFNLDGKDF-LQGPVKEELMQLLGLSKERKPSVHVVMNLPAKAIE 370 380 390 400 410 420 340 350 360 370 380 390 pF1KE2 HIHQNVESFPGKNLQALGVSKVEKEHWLYPQQITTNQWKNGATRDSRGKMLSPATKPEWQ XP_005 FLSAFKWLLDGQPCSSEFLPIVHCYSFSKDANPAEDVRQRAGAVLGISLEACSSVHLVRN 430 440 450 460 470 480 448 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:53:20 2016 done: Mon Nov 7 15:53:21 2016 Total Scan time: 9.430 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]