FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2265, 448 aa
  1>>>pF1KE2265 448 - 448 aa - 448 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9795+/-0.000842; mu= 14.2076+/- 0.050
 mean_var=74.6634+/-14.826, 0's: 0 Z-trim(107.8): 12  B-trim: 427 in 1/51
 Lambda= 0.148430
 statistics sampled from 9810 (9814) to 9810 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.682), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.930

The best scores are:                                      opt bits E(32554)
CCDS6349.1 TRMT12 gene_id:55039|Hs108|chr8         ( 448) 3087 670.4  1e-192


>>CCDS6349.1 TRMT12 gene_id:55039|Hs108|chr8              (448 aa)
 initn: 3087 init1: 3087 opt: 3087  Z-score: 3573.2  bits: 670.4 E(32554): 1e-192
Smith-Waterman score: 3087; 99.8% identity (99.8% similar) in 448 aa overlap (1-448:1-448)

               10        20        30        40        50        60
pF1KE2 MRENVVVSNMERESGKPVAVVAVVTEPRFTQRYREYLQRQKLFDTQHRVEKMPDGSVALP
       ::::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::
CCDS63 MRENVVVSNMERESGKPVAVVAVVTEPWFTQRYREYLQRQKLFDTQHRVEKMPDGSVALP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 VLGETLPEQHLQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEVSRWVEGRGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 VLGETLPEQHLQELRNRVAPGSPCMLTQLPDPVPSKRAQGCSPAQKLCLEVSRWVEGRGV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KWSAELEADLPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KWSAELEADLPRSWQRHGNLLLLSEDCFQAKQWKNLGPELWETVALALGVQRLAKRGRVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 PDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEVLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 PDGTRTPAVTLLLGDHGWVEHVDNGIRYKFDVTQCMFSFGNITEKLRVASLSCAGEVLVD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 LYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LYAGIGYFTLPFLVHAGAAFVHACEWNPHAVVALRNNLEINGVADRCQIHFGDNRKLKLS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 NIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEHW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NIADRVILGLIPSSEEGWPIACQVLRQDAGGILHIHQNVESFPGKNLQALGVSKVEKEHW
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 LYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 LYPQQITTNQWKNGATRDSRGKMLSPATKPEWQRWAESAETRIATLLQQVHGKPWKTQIL
              370       380       390       400       410       420

              430       440        
pF1KE2 HIQPVKSYAPHVDHIVLDLECCPCPSVG
       ::::::::::::::::::::::::::::
CCDS63 HIQPVKSYAPHVDHIVLDLECCPCPSVG
              430       440        




448 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:53:19 2016 done: Mon Nov  7 15:53:20 2016
 Total Scan time:  2.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]