FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7848, 622 aa 1>>>pF1KB7848 622 - 622 aa - 622 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.8944+/-0.000408; mu= 4.6793+/- 0.025 mean_var=245.8570+/-49.846, 0's: 0 Z-trim(120.6): 12 B-trim: 1912 in 2/50 Lambda= 0.081796 statistics sampled from 36057 (36073) to 36057 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.423), width: 16 Scan time: 12.630 The best scores are: opt bits E(85289) NP_006464 (OMIM: 602946) TAF6-like RNA polymerase ( 622) 4210 510.1 8.9e-144 XP_005273771 (OMIM: 602946) PREDICTED: TAF6-like R ( 613) 3220 393.3 1.3e-108 XP_016872589 (OMIM: 602946) PREDICTED: TAF6-like R ( 411) 2400 296.4 1.3e-79 XP_016868057 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05 XP_006716164 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05 XP_011514845 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05 XP_006716165 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05 XP_011514844 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05 XP_006716163 (OMIM: 602955,617126) PREDICTED: tran ( 677) 320 51.1 1.5e-05 NP_647476 (OMIM: 602955,617126) transcription init ( 677) 320 51.1 1.5e-05 NP_005632 (OMIM: 602955,617126) transcription init ( 677) 320 51.1 1.5e-05 NP_001177344 (OMIM: 602955,617126) transcription i ( 714) 320 51.1 1.5e-05 >>NP_006464 (OMIM: 602946) TAF6-like RNA polymerase II p (622 aa) initn: 4210 init1: 4210 opt: 4210 Z-score: 2702.2 bits: 510.1 E(85289): 8.9e-144 Smith-Waterman score: 4210; 100.0% identity (100.0% similar) in 622 aa overlap (1-622:1-622) 10 20 30 40 50 60 pF1KB7 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB7 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB7 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB7 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB7 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM 550 560 570 580 590 600 610 620 pF1KB7 IGRTSRPARRWALSDYSLYLPL :::::::::::::::::::::: NP_006 IGRTSRPARRWALSDYSLYLPL 610 620 >>XP_005273771 (OMIM: 602946) PREDICTED: TAF6-like RNA p (613 aa) initn: 3220 init1: 3220 opt: 3220 Z-score: 2070.9 bits: 393.3 E(85289): 1.3e-108 Smith-Waterman score: 4132; 98.6% identity (98.6% similar) in 622 aa overlap (1-622:1-613) 10 20 30 40 50 60 pF1KB7 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL ::::::::::::::::::::::::: :::::::::::::::::::::::::: XP_005 GCAETAVRVHVSYLDGKGNLAPQGS---------DDLLKYYHQVTRAVLGDDPQLMKVAL 130 140 150 160 170 190 200 210 220 230 240 pF1KB7 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG 300 310 320 330 340 350 370 380 390 400 410 420 pF1KB7 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP 360 370 380 390 400 410 430 440 450 460 470 480 pF1KB7 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD 420 430 440 450 460 470 490 500 510 520 530 540 pF1KB7 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG 480 490 500 510 520 530 550 560 570 580 590 600 pF1KB7 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM 540 550 560 570 580 590 610 620 pF1KB7 IGRTSRPARRWALSDYSLYLPL :::::::::::::::::::::: XP_005 IGRTSRPARRWALSDYSLYLPL 600 610 >>XP_016872589 (OMIM: 602946) PREDICTED: TAF6-like RNA p (411 aa) initn: 2395 init1: 2395 opt: 2400 Z-score: 1550.2 bits: 296.4 E(85289): 1.3e-79 Smith-Waterman score: 2400; 93.0% identity (94.8% similar) in 383 aa overlap (241-622:33-411) 220 230 240 250 260 pF1KB7 EQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLY-CVLEPLAASINPLNDHWTLRDGAAL :::: : : . . :.. : . . . XP_016 YKYAKVLVLQPSGPRPVTPGSLLHLTPALPSVLYRCY--SLCVVLCPVGWHHASFPSLTE 10 20 30 40 50 60 270 280 290 300 310 320 pF1KB7 LLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPH :: ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WCSH--RTHGDLVSGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPH 70 80 90 100 110 330 340 350 360 370 380 pF1KB7 LSTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVAVERLLKMKAQAAEPNRGGPGGRGC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LSTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVAVERLLKMKAQAAEPNRGGPGGRGC 120 130 140 150 160 170 390 400 410 420 430 440 pF1KB7 RRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFG 180 190 200 210 220 230 450 460 470 480 490 500 pF1KB7 DSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGG 240 250 260 270 280 290 510 520 530 540 550 560 pF1KB7 PASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 PASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQA 300 310 320 330 340 350 570 580 590 600 610 620 pF1KB7 GRRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTSRPARRWALSDYSLYLPL ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GRRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTSRPARRWALSDYSLYLPL 360 370 380 390 400 410 >>XP_016868057 (OMIM: 602955,617126) PREDICTED: transcri (667 aa) initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05 Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605) 10 20 30 40 50 60 pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL : . :..: : . ... .::. ::.:: XP_016 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK- :. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:. XP_016 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV 60 70 80 90 100 110 130 pF1KB7 --------------GC-----------------AETAVRVH------------------V :: ::.. .. . XP_016 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA 120 130 140 150 160 170 140 150 160 170 180 pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD . ::::. :: : .. :. . ::...:.: .:. :::. XP_016 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS 180 190 200 210 220 230 190 200 210 220 230 pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV . :. . .:: : ... ::. :...: : :......:. :: : : ::. :. XP_016 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI 240 250 260 270 280 290 240 250 260 270 280 290 pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD .:. :.. ...::.::: :: :...: . .... ..: .. : .: XP_016 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 300 310 320 330 340 350 300 310 320 330 340 350 pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV : .::...:: :: ... .. :.:. ...::: .:: .. :: . XP_016 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS 360 370 380 390 400 410 360 370 380 390 400 410 pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA . : ..: : . .: . . :. : : .. .: :. .. . XP_016 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT 420 430 440 450 460 470 420 430 440 450 460 470 pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD .: : : ::. :.: . ..: . .. . : :: : :: XP_016 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT 480 490 500 510 520 480 490 500 510 520 530 pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA : .. .:. . :. . . .: . :: .:.... :.. .:. . : : XP_016 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA 530 540 550 560 570 540 550 560 570 580 pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS :: . .: : :. . . . : : XP_016 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ 580 590 600 610 620 630 >>XP_006716164 (OMIM: 602955,617126) PREDICTED: transcri (667 aa) initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05 Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605) 10 20 30 40 50 60 pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL : . :..: : . ... .::. ::.:: XP_006 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK- :. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:. XP_006 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV 60 70 80 90 100 110 130 pF1KB7 --------------GC-----------------AETAVRVH------------------V :: ::.. .. . XP_006 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA 120 130 140 150 160 170 140 150 160 170 180 pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD . ::::. :: : .. :. . ::...:.: .:. :::. XP_006 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS 180 190 200 210 220 230 190 200 210 220 230 pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV . :. . .:: : ... ::. :...: : :......:. :: : : ::. :. XP_006 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI 240 250 260 270 280 290 240 250 260 270 280 290 pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD .:. :.. ...::.::: :: :...: . .... ..: .. : .: XP_006 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 300 310 320 330 340 350 300 310 320 330 340 350 pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV : .::...:: :: ... .. :.:. ...::: .:: .. :: . XP_006 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS 360 370 380 390 400 410 360 370 380 390 400 410 pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA . : ..: : . .: . . :. : : .. .: :. .. . XP_006 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT 420 430 440 450 460 470 420 430 440 450 460 470 pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD .: : : ::. :.: . ..: . .. . : :: : :: XP_006 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT 480 490 500 510 520 480 490 500 510 520 530 pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA : .. .:. . :. . . .: . :: .:.... :.. .:. . : : XP_006 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA 530 540 550 560 570 540 550 560 570 580 pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS :: . .: : :. . . . : : XP_006 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ 580 590 600 610 620 630 >>XP_011514845 (OMIM: 602955,617126) PREDICTED: transcri (667 aa) initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05 Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605) 10 20 30 40 50 60 pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL : . :..: : . ... .::. ::.:: XP_011 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK- :. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:. XP_011 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV 60 70 80 90 100 110 130 pF1KB7 --------------GC-----------------AETAVRVH------------------V :: ::.. .. . XP_011 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA 120 130 140 150 160 170 140 150 160 170 180 pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD . ::::. :: : .. :. . ::...:.: .:. :::. XP_011 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS 180 190 200 210 220 230 190 200 210 220 230 pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV . :. . .:: : ... ::. :...: : :......:. :: : : ::. :. XP_011 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI 240 250 260 270 280 290 240 250 260 270 280 290 pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD .:. :.. ...::.::: :: :...: . .... ..: .. : .: XP_011 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 300 310 320 330 340 350 300 310 320 330 340 350 pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV : .::...:: :: ... .. :.:. ...::: .:: .. :: . XP_011 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS 360 370 380 390 400 410 360 370 380 390 400 410 pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA . : ..: : . .: . . :. : : .. .: :. .. . XP_011 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT 420 430 440 450 460 470 420 430 440 450 460 470 pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD .: : : ::. :.: . ..: . .. . : :: : :: XP_011 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT 480 490 500 510 520 480 490 500 510 520 530 pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA : .. .:. . :. . . .: . :: .:.... :.. .:. . : : XP_011 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA 530 540 550 560 570 540 550 560 570 580 pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS :: . .: : :. . . . : : XP_011 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ 580 590 600 610 620 630 >>XP_006716165 (OMIM: 602955,617126) PREDICTED: transcri (667 aa) initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05 Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605) 10 20 30 40 50 60 pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL : . :..: : . ... .::. ::.:: XP_006 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK- :. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:. XP_006 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV 60 70 80 90 100 110 130 pF1KB7 --------------GC-----------------AETAVRVH------------------V :: ::.. .. . XP_006 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA 120 130 140 150 160 170 140 150 160 170 180 pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD . ::::. :: : .. :. . ::...:.: .:. :::. XP_006 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS 180 190 200 210 220 230 190 200 210 220 230 pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV . :. . .:: : ... ::. :...: : :......:. :: : : ::. :. XP_006 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI 240 250 260 270 280 290 240 250 260 270 280 290 pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD .:. :.. ...::.::: :: :...: . .... ..: .. : .: XP_006 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 300 310 320 330 340 350 300 310 320 330 340 350 pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV : .::...:: :: ... .. :.:. ...::: .:: .. :: . XP_006 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS 360 370 380 390 400 410 360 370 380 390 400 410 pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA . : ..: : . .: . . :. : : .. .: :. .. . XP_006 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT 420 430 440 450 460 470 420 430 440 450 460 470 pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD .: : : ::. :.: . ..: . .. . : :: : :: XP_006 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT 480 490 500 510 520 480 490 500 510 520 530 pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA : .. .:. . :. . . .: . :: .:.... :.. .:. . : : XP_006 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA 530 540 550 560 570 540 550 560 570 580 pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS :: . .: : :. . . . : : XP_006 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ 580 590 600 610 620 630 >>XP_011514844 (OMIM: 602955,617126) PREDICTED: transcri (667 aa) initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05 Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605) 10 20 30 40 50 60 pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL : . :..: : . ... .::. ::.:: XP_011 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL 10 20 30 40 50 70 80 90 100 110 120 pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK- :. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:. XP_011 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV 60 70 80 90 100 110 130 pF1KB7 --------------GC-----------------AETAVRVH------------------V :: ::.. .. . XP_011 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA 120 130 140 150 160 170 140 150 160 170 180 pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD . ::::. :: : .. :. . ::...:.: .:. :::. XP_011 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS 180 190 200 210 220 230 190 200 210 220 230 pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV . :. . .:: : ... ::. :...: : :......:. :: : : ::. :. XP_011 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI 240 250 260 270 280 290 240 250 260 270 280 290 pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD .:. :.. ...::.::: :: :...: . .... ..: .. : .: XP_011 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD 300 310 320 330 340 350 300 310 320 330 340 350 pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV : .::...:: :: ... .. :.:. ...::: .:: .. :: . XP_011 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS 360 370 380 390 400 410 360 370 380 390 400 410 pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA . : ..: : . .: . . :. : : .. .: :. .. . XP_011 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT 420 430 440 450 460 470 420 430 440 450 460 470 pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD .: : : ::. :.: . ..: . .. . : :: : :: XP_011 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT 480 490 500 510 520 480 490 500 510 520 530 pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA : .. .:. . :. . . .: . :: .:.... :.. .:. . : : XP_011 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA 530 540 550 560 570 540 550 560 570 580 pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS :: . .: : :. . . . : : XP_011 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ 580 590 600 610 620 630 >>XP_006716163 (OMIM: 602955,617126) PREDICTED: transcri (677 aa) initn: 506 init1: 211 opt: 320 Z-score: 220.8 bits: 51.1 E(85289): 1.5e-05 Smith-Waterman score: 431; 24.3% identity (50.8% similar) in 596 aa overlap (35-556:38-615) 10 20 30 40 50 60 pF1KB7 EERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLT ::...: ::..: .:.. .::. ::.::: XP_006 KLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 VEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK-- . :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:. XP_006 TSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVP 70 80 90 100 110 120 130 pF1KB7 -------------GC-----------------AETAVRVH------------------VS :: ::.. .. .. XP_006 LDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAT 130 140 150 160 170 180 140 150 160 170 180 pF1KB7 YLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDL ::::. :: : .. :. . ::...:.: .:. :::.. XP_006 TADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSI 190 200 210 220 230 240 190 200 210 220 230 240 pF1KB7 QTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG :. . .:: : ... ::. :...: : :......:. :: : : ::. :. XP_006 ATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIP 250 260 270 280 290 300 250 260 270 280 290 300 pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP .:. :.. ...::.::: :: :...: . .... ..: .. : .: XP_006 AVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDE 310 320 330 340 350 360 310 320 330 340 350 pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV- : .::...:: :: ... .. :.:. ...::: .:: .. :: . XP_006 KTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSL 370 380 390 400 410 420 360 370 380 390 400 410 pF1KB7 ---YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGAE . : ..: : . .: . . :. : : .. .: :. .. .. XP_006 LLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQ 430 440 450 460 470 480 420 430 440 450 460 470 pF1KB7 PSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDK : : : ::. :.: . ..: . .. . : :: : :: : XP_006 PRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPTK 490 500 510 520 530 480 490 500 510 520 530 pF1KB7 KEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRAR .. .:. . :. . . .: . :: .:.... :.. .:. . : : XP_006 FIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTAT 540 550 560 570 580 540 550 560 570 580 590 pF1KB7 GAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSP :: . .: : :. . . . : : XP_006 TAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE 590 600 610 620 630 640 >>NP_647476 (OMIM: 602955,617126) transcription initiati (677 aa) initn: 506 init1: 211 opt: 320 Z-score: 220.8 bits: 51.1 E(85289): 1.5e-05 Smith-Waterman score: 431; 24.3% identity (50.8% similar) in 596 aa overlap (35-556:38-615) 10 20 30 40 50 60 pF1KB7 EERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLT ::...: ::..: .:.. .::. ::.::: NP_647 KLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLT 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 VEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK-- . :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:. NP_647 TSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVP 70 80 90 100 110 120 130 pF1KB7 -------------GC-----------------AETAVRVH------------------VS :: ::.. .. .. NP_647 LDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAT 130 140 150 160 170 180 140 150 160 170 180 pF1KB7 YLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDL ::::. :: : .. :. . ::...:.: .:. :::.. NP_647 TADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSI 190 200 210 220 230 240 190 200 210 220 230 240 pF1KB7 QTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG :. . .:: : ... ::. :...: : :......:. :: : : ::. :. NP_647 ATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIP 250 260 270 280 290 300 250 260 270 280 290 300 pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP .:. :.. ...::.::: :: :...: . .... ..: .. : .: NP_647 AVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDE 310 320 330 340 350 360 310 320 330 340 350 pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV- : .::...:: :: ... .. :.:. ...::: .:: .. :: . NP_647 KTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSL 370 380 390 400 410 420 360 370 380 390 400 410 pF1KB7 ---YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGAE . : ..: : . .: . . :. : : .. .: :. .. .. NP_647 LLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQ 430 440 450 460 470 480 420 430 440 450 460 470 pF1KB7 PSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDK : : : ::. :.: . ..: . .. . : :: : :: : NP_647 PRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPTK 490 500 510 520 530 480 490 500 510 520 530 pF1KB7 KEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRAR .. .:. . :. . . .: . :: .:.... :.. .:. . : : NP_647 FIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTAT 540 550 560 570 580 540 550 560 570 580 590 pF1KB7 GAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSP :: . .: : :. . . . : : NP_647 TAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE 590 600 610 620 630 640 622 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:49:28 2016 done: Mon Nov 7 15:49:29 2016 Total Scan time: 12.630 Total Display time: 0.130 Function used was FASTA [36.3.4 Apr, 2011]