FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2125, 328 aa
  1>>>pF1KE2125 328 - 328 aa - 328 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8093+/-0.000919; mu= 11.0718+/- 0.055
 mean_var=141.8304+/-27.906, 0's: 0 Z-trim(110.9): 27  B-trim: 93 in 1/49
 Lambda= 0.107694
 statistics sampled from 11959 (11977) to 11959 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.368), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS47801.1 PINX1 gene_id:54984|Hs108|chr8         ( 328) 2174 348.9 3.2e-96
CCDS64825.1 PINX1 gene_id:54984|Hs108|chr8         ( 174)  906 151.7 4.1e-37


>>CCDS47801.1 PINX1 gene_id:54984|Hs108|chr8              (328 aa)
 initn: 2174 init1: 2174 opt: 2174  Z-score: 1840.8  bits: 348.9 E(32554): 3.2e-96
Smith-Waterman score: 2174; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328)

               10        20        30        40        50        60
pF1KE2 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 KNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KNRVHYMKFTKGKDLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTIQE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 YFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQPKAKRHTEGKP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YFAKRMAALKNKPQVPVPGSDISETQVERKRGKKRNKEATGKDVESYLQPKAKRHTEGKP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 ERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ERAEAQERVAKKKSAPAEEQLRGPCWDQSSKASAQDAGDHVQPPEGRDFTLKPKKRRGKK
              250       260       270       280       290       300

              310       320        
pF1KE2 KLQKPVEIAEDATLEETLVKKKKKKDSK
       ::::::::::::::::::::::::::::
CCDS47 KLQKPVEIAEDATLEETLVKKKKKKDSK
              310       320        

>>CCDS64825.1 PINX1 gene_id:54984|Hs108|chr8              (174 aa)
 initn: 897 init1: 897 opt: 906  Z-score: 779.8  bits: 151.7 E(32554): 4.1e-37
Smith-Waterman score: 906; 93.2% identity (96.6% similar) in 146 aa overlap (1-144:1-146)

               10        20        30        40        50        60
pF1KE2 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MSMLAERRRKQKWAVDPQNTAWSNDDSKFGQRMLEKMGWSKGKGLGAQEQGATDHIKVQV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 KNNHLGLGATINNEDNWIAHQDDFNQLLAELNTCHGQETTDSSDKKEKKSFSLEEKSKIS
               70        80        90       100       110       120

              130         140       150       160       170        
pF1KE2 KNRVHYMKFTKGK--DLSSRSKTDLDCIFGKRQSKKTPEGDASPSTPEENETTTTSAFTI
       ::::::::::::.  .: ::.. . :                                  
CCDS64 KNRVHYMKFTKGRCQSLHSRGERNHDNQRLHHPGVLCQADGSTEEQAPGSSSRV      
              130       140       150       160       170          




328 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:46:57 2016 done: Mon Nov  7 15:46:57 2016
 Total Scan time:  2.840 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]