FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2224, 463 aa
  1>>>pF1KE2224 463 - 463 aa - 463 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7188+/-0.000932; mu= 14.9543+/- 0.056
 mean_var=60.8755+/-12.190, 0's: 0 Z-trim(104.5): 18  B-trim: 3 in 1/50
 Lambda= 0.164382
 statistics sampled from 7909 (7914) to 7909 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.243), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS35496.1 TRMT11 gene_id:60487|Hs108|chr6        ( 463) 3142 753.8 8.2e-218


>>CCDS35496.1 TRMT11 gene_id:60487|Hs108|chr6             (463 aa)
 initn: 3142 init1: 3142 opt: 3142  Z-score: 4023.9  bits: 753.8 E(32554): 8.2e-218
Smith-Waterman score: 3142; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)

               10        20        30        40        50        60
pF1KE2 MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MALSCTLNRYLLLMAQEHLEFRLPEIKSLLLLFGGQFASSQETYGKSPFWILSIPSEDIA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 RNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 RNLMKRTVCAKSIFELWGHGQSPEELYSSLKNYPVEKMVPFLHSDSTYKIKIHTFNKTLT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 QEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWIADGQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QEEKIKRIDALEFLPFEGKVNLKKPQHVFSVLEDYGLDPNCIPENPHNIYFGRWIADGQR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 ELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ELIESYSVKKRHFIGNTSMDAGLSFIMANHGKVKENDIVFDPFVGTGGLLIACAHFGAYV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 YGTDIDYNTVHGLGKATRKNQKWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YGTDIDYNTVHGLGKATRKNQKWRGPDENIRANLRQYGLEKYYLDVLVSDASKPSWRKGT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLSDMFLDLLNFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 YFDAIITDPPYGIRESTRRTGSQKEIPKGIEKWEKCPESHVPVSLSYHLSDMFLDLLNFA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 AETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 AETLVLGGRLVYWLPVYTPEYTEEMVPWHPCLELVSNCEQKLSSHTSRRLITMEKVKKFE
              370       380       390       400       410       420

              430       440       450       460   
pF1KE2 NRDQYSHLLSDHFLPYQGHNSFREKYFSGVTKRIAKEEKSTQE
       :::::::::::::::::::::::::::::::::::::::::::
CCDS35 NRDQYSHLLSDHFLPYQGHNSFREKYFSGVTKRIAKEEKSTQE
              430       440       450       460   




463 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:46:20 2016 done: Mon Nov  7 15:46:20 2016
 Total Scan time:  2.870 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]