(Circular) (Six-base) MAPSORT of: pFN21AE2214.seq Check: 1167 from: 1 to: 6295 pFN21AE2214 6295 bp With 182 enzymes: SgfI * July 6, 2012 17:36 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2982 4105 278 Size: 53 83 186 936 1446 1123 2468 Fragments arranged by size: 2468 1446 1123 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3638 1937 Size: 1701 4594 Acc65I G'GTAC_C Cuts at: 3616 3616 Size: 6295 AclI AA'CG_TT Cuts at: 1563 4422 4795 1563 Size: 2859 373 3063 Fragments arranged by size: 3063 2859 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 4358 5742 6010 1632 Size: 2726 1384 268 1917 Fragments arranged by size: 2726 1917 1384 268 AfeI AGC'GCT Cuts at: 2364 2876 3350 2364 Size: 512 474 5309 Fragments arranged by size: 5309 512 474 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 6098 AflIII A'CryG_T Cuts at: 1203 2343 2489 3142 3156 3291 5194 6171 1203 Size: 1140 146 653 14 135 1903 977 1327 Fragments arranged by size: 1903 1327 1140 977 653 146 135 14 AgeI A'CCGG_T Cuts at: 2566 5126 2566 Size: 2560 3735 AhdI GACnn_n'nnGTC Cuts at: 2683 5024 2683 Size: 2341 3954 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6295 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 3311 1184 Size: 2127 4168 AlwNI CAG_nnn'CTG Cuts at: 2661 3070 3259 4038 5610 2661 Size: 409 189 779 1572 3346 Fragments arranged by size: 3346 1572 779 409 189 ApaI G_GGCC'C Cuts at: 2114 2742 3329 2114 Size: 628 587 5080 Fragments arranged by size: 5080 628 587 ApaLI G'TGCA_C Cuts at: 4352 5508 4352 Size: 1156 5139 ApoI r'AATT_y Cuts at: 1493 3604 3830 3982 6091 1493 Size: 2111 226 152 2109 1697 Fragments arranged by size: 2111 2109 1697 226 152 AseI AT'TA_AT Cuts at: 160 1032 4849 160 Size: 872 3817 1606 Fragments arranged by size: 3817 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6295 AvaI C'yCGr_G Cuts at: 1870 1943 2038 2087 2114 2262 2617 2866 2914 Size: 73 95 49 27 148 355 249 48 Cuts at: 2914 3111 3620 1870 Size: 197 509 4545 Fragments arranged by size: 4545 509 355 249 197 148 95 73 49 48 27 BamHI G'GATC_C Cuts at: 3625 3992 3625 Size: 367 5928 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2071 2143 2319 2386 2433 Size: 325 217 627 284 72 176 67 47 Cuts at: 2433 3187 3310 3365 3468 3516 3616 5071 618 Size: 754 123 55 103 48 100 1455 1842 Fragments arranged by size: 1842 1455 754 627 325 284 217 176 123 103 100 72 67 55 48 47 BanII G_rGCy'C Cuts at: 1391 2114 2399 2595 2742 3204 3329 3614 1391 Size: 723 285 196 147 462 125 285 4072 Fragments arranged by size: 4072 723 462 285 285 196 147 125 BbeI G_GCGC'C Cuts at: 2075 2437 3369 3472 2075 Size: 362 932 103 4898 Fragments arranged by size: 4898 932 362 103 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 5324 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4486 4520 1903 Size: 34 2549 34 3678 Fragments arranged by size: 3678 2549 34 34 BciVI GTATCCnnnnn_n' Cuts at: 4187 5397 4187 Size: 1210 5085 BclI T'GATC_A Cuts at: 1548 2502 1548 Size: 954 5341 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2109 2183 2384 Size: 107 122 71 631 605 437 74 201 Cuts at: 2384 3021 4906 136 Size: 637 1885 1525 Fragments arranged by size: 1885 1525 637 631 605 437 201 122 107 74 71 BglII A'GATC_T Cuts at: 6290 6290 Size: 6295 BlpI GC'TnA_GC Cuts at: 3712 3712 Size: 6295 Bme1580I G_kGCm'C Cuts at: 1790 2114 2148 2389 2742 3192 3329 3360 4356 Size: 324 34 241 353 450 137 31 996 Cuts at: 4356 5512 1790 Size: 1156 2573 Fragments arranged by size: 2573 1156 996 450 353 324 241 137 34 31 BmgBI CAC'GTC Cuts at: 1318 2490 3157 1318 Size: 1172 667 4456 Fragments arranged by size: 4456 1172 667 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3103 4026 4984 Size: 416 53 83 399 24 1686 923 958 Cuts at: 4984 442 Size: 1753 Fragments arranged by size: 1753 1686 958 923 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6295 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2920 2920 Size: 6295 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2312 2836 4955 1239 Size: 1073 524 2119 2579 Fragments arranged by size: 2579 2119 1073 524 Bpu10I CC'TnA_GC Cuts at: 2700 2700 Size: 6295 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 4420 5285 5583 4420 Size: 865 298 5132 Fragments arranged by size: 5132 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4958 882 Size: 617 3459 2219 Fragments arranged by size: 3459 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3379 4086 493 Size: 711 2175 707 2702 Fragments arranged by size: 2702 2175 711 707 BsaBI GATnn'nnATC Cuts at: 6289 6289 Size: 6295 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2072 2156 2434 2546 Size: 53 83 186 936 539 84 278 112 Cuts at: 2546 2766 2979 3366 3469 4102 4484 5119 275 Size: 220 213 387 103 633 382 635 1451 Fragments arranged by size: 1451 936 635 633 539 387 382 278 220 213 186 112 103 84 83 53 BsaWI w'CCGG_w Cuts at: 2566 4728 5126 5400 5547 5958 2566 Size: 2162 398 274 147 411 2903 Fragments arranged by size: 2903 2162 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2045 2075 3479 3509 1178 Size: 30 165 30 642 30 1404 30 3964 Fragments arranged by size: 3964 1404 642 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2223 2317 2801 2831 3391 1186 Size: 1037 94 484 30 560 4090 Fragments arranged by size: 4090 1037 560 484 94 30 BseYI C'CCAG_C Cuts at: 2049 2107 2517 2877 3302 3322 3545 5498 5994 Size: 58 410 360 425 20 223 1953 496 Cuts at: 5994 2049 Size: 2350 Fragments arranged by size: 2350 1953 496 425 410 360 223 58 20 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 3191 1163 Size: 573 1455 4267 Fragments arranged by size: 4267 1455 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2478 2567 2680 3166 3433 3745 Size: 275 186 477 89 113 486 267 312 Cuts at: 3745 4506 5534 1540 Size: 761 1028 2301 Fragments arranged by size: 2301 1028 761 486 477 312 275 267 186 113 89 BsiHKAI G_wGCw'C Cuts at: 4356 4441 5512 4356 Size: 85 1071 5139 Fragments arranged by size: 5139 1071 85 BsmI GAATG_Cn' Cuts at: 2236 3806 3899 2236 Size: 1570 93 4632 Fragments arranged by size: 4632 1570 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2114 2148 2389 2399 2595 2742 3192 Size: 399 324 34 241 10 196 147 450 Cuts at: 3192 3204 3329 3360 3614 4356 4441 5512 1391 Size: 12 125 31 254 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 450 399 324 254 241 196 147 125 85 34 31 12 10 BspEI T'CCGG_A Cuts at: 5958 5958 Size: 6295 BspHI T'CATG_A Cuts at: 4184 5914 4184 Size: 1730 4565 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3426 3650 844 Size: 2582 224 3489 Fragments arranged by size: 3489 2582 224 BsrBI CCG'CTC Cuts at: 1394 1823 2278 2325 2354 3592 4182 1394 Size: 429 455 47 29 1238 590 3507 Fragments arranged by size: 3507 1238 590 455 429 47 29 BsrDI GCAATG_nn' Cuts at: 65 1248 4790 4964 65 Size: 1183 3542 174 1396 Fragments arranged by size: 3542 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2103 2316 2480 2566 2637 3184 3313 Size: 110 293 213 164 86 71 547 129 Cuts at: 3313 3552 4939 5126 1700 Size: 239 1387 187 2869 Fragments arranged by size: 2869 1387 547 293 239 213 187 164 129 110 86 71 BsrGI T'GTAC_A Cuts at: 96 3535 96 Size: 3439 2856 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6295 BssSI C'ACGA_G Cuts at: 2729 4355 5367 2729 Size: 1626 1012 3657 Fragments arranged by size: 3657 1626 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 3187 794 Size: 2393 3902 BstBI TT'CG_AA Cuts at: 5099 5099 Size: 6295 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6295 BstYI r'GATC_y Cuts at: 1972 2794 3625 3992 4377 4394 5846 5932 5944 Size: 822 831 367 385 17 1452 86 12 Cuts at: 5944 6290 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 831 822 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 3034 3034 Size: 6295 BtgI C'CryG_G Cuts at: 513 1065 2225 2379 2390 2453 3150 3361 3441 Size: 552 1160 154 11 63 697 211 80 Cuts at: 3441 513 Size: 3367 Fragments arranged by size: 3367 1160 697 552 211 154 80 63 11 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5556 Fragments arranged by size: 5556 683 56 BtsI GCAGTG_nn' Cuts at: 2128 2778 3811 4605 4625 2128 Size: 650 1033 794 20 3798 Fragments arranged by size: 3798 1033 794 650 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 6295 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 6260 DraI TTT'AAA Cuts at: 3599 3599 Size: 6295 DraIII CAC_nnn'GTG Cuts at: 3214 3214 Size: 6295 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2978 5302 809 Size: 507 1662 2324 1802 Fragments arranged by size: 2324 1802 1662 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2162 2475 3163 Size: 54 1425 50 275 18 332 313 688 Cuts at: 3163 3576 3742 4631 6260 8 Size: 413 166 889 1629 43 Fragments arranged by size: 1629 1425 889 688 413 332 313 275 166 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2475 3163 3742 1537 Size: 275 663 688 579 4090 Fragments arranged by size: 4090 688 663 579 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2948 4225 1353 Size: 1595 1277 3423 Fragments arranged by size: 3423 1595 1277 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2081 2984 4882 5256 5402 387 Size: 1064 138 492 903 1898 374 146 1280 Fragments arranged by size: 1898 1280 1064 903 492 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2312 2836 4358 4955 5742 6010 1239 Size: 393 680 524 1522 597 787 268 1524 Fragments arranged by size: 1524 1522 787 680 597 524 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2732 2732 Size: 6295 EcoO109I rG'GnC_Cy Cuts at: 2091 2111 2738 2739 2862 2091 Size: 20 627 1 123 5524 Fragments arranged by size: 5524 627 123 20 1 EcoRI G'AATT_C Cuts at: 3604 3982 3604 Size: 378 5917 FspI TGC'GCA Cuts at: 4801 4801 Size: 6295 HaeII r_GCGC'y Cuts at: 1678 2014 2075 2366 2437 2501 2616 2878 3106 Size: 336 61 291 71 64 115 262 228 Cuts at: 3106 3352 3369 3472 5442 1678 Size: 246 17 103 1970 2531 Fragments arranged by size: 2531 1970 336 291 262 246 228 115 103 71 64 61 17 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2669 2701 3017 3049 4936 Size: 32 135 32 1097 32 316 32 1887 Cuts at: 4936 4968 5010 5042 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1887 1097 316 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3639 3885 669 Size: 988 281 1701 246 3079 Fragments arranged by size: 3079 1701 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6295 HpaI GTT'AAC Cuts at: 3885 3885 Size: 6295 KasI G'GCGC_C Cuts at: 2071 2433 3365 3468 2071 Size: 362 932 103 4898 Fragments arranged by size: 4898 932 362 103 KpnI G_GTAC'C Cuts at: 3620 3620 Size: 6295 MfeI C'AATT_G Cuts at: 3894 3894 Size: 6295 MluI A'CGCG_T Cuts at: 2343 3291 6171 2343 Size: 948 2880 2467 Fragments arranged by size: 2880 2467 948 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2787 5409 5593 1305 Size: 1482 2622 184 2007 Fragments arranged by size: 2622 2007 1482 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2164 3578 10 Size: 54 1425 343 332 1414 2727 Fragments arranged by size: 2727 1425 1414 343 332 54 MslI CAynn'nnrTG Cuts at: 518 1166 3377 4253 4612 4771 518 Size: 648 2211 876 359 159 2042 Fragments arranged by size: 2211 2042 876 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2227 2271 2527 2536 2658 2825 3363 3443 Size: 621 44 256 9 122 167 538 80 Cuts at: 3443 3582 3711 4388 5536 5781 1606 Size: 139 129 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 621 538 256 245 167 139 129 122 80 44 9 NaeI GCC'GGC Cuts at: 2105 2482 2639 2105 Size: 377 157 5761 Fragments arranged by size: 5761 377 157 NarI GG'CG_CC Cuts at: 2072 2434 3366 3469 2072 Size: 362 932 103 4898 Fragments arranged by size: 4898 932 362 103 NcoI C'CATG_G Cuts at: 513 1065 2379 2453 513 Size: 552 1314 74 4355 Fragments arranged by size: 4355 1314 552 74 NdeI CA'TA_TG Cuts at: 387 387 Size: 6295 NgoMIV G'CCGG_C Cuts at: 2103 2480 2637 2103 Size: 377 157 5761 Fragments arranged by size: 5761 377 157 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6295 NotI GC'GGCC_GC Cuts at: 2475 3742 2475 Size: 1267 5028 NruI TCG'CGA Cuts at: 2563 2563 Size: 6295 NspI r_CATG'y Cuts at: 1132 1229 3146 3653 5198 1132 Size: 97 1917 507 1545 2229 Fragments arranged by size: 2229 1917 1545 507 97 PasI CC'CwG_GG Cuts at: 1348 2541 2760 1348 Size: 1193 219 4883 Fragments arranged by size: 4883 1193 219 PciI A'CATG_T Cuts at: 3142 5194 3142 Size: 2052 4243 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 6295 PfoI T'CCnGG_A Cuts at: 3056 3056 Size: 6295 PmeI GTTT'AAAC Cuts at: 3599 3599 Size: 6295 PmlI CAC'GTG Cuts at: 3379 3379 Size: 6295 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4364 4396 5877 5909 4364 Size: 32 1481 32 4750 Fragments arranged by size: 4750 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6295 PsiI TTA'TAA Cuts at: 3865 3865 Size: 6295 PspOMI G'GGCC_C Cuts at: 2110 2738 3325 2110 Size: 628 587 5080 Fragments arranged by size: 5080 628 587 PstI C_TGCA'G Cuts at: 830 3647 830 Size: 2817 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6295 PvuII CAG'CTG Cuts at: 2527 3582 2527 Size: 1055 5240 SacII CC_GC'GG Cuts at: 2228 3364 3444 2228 Size: 1136 80 5079 Fragments arranged by size: 5079 1136 80 SalI G'TCGA_C Cuts at: 1936 3637 1936 Size: 1701 4594 SbfI CC_TGCA'GG Cuts at: 3647 3647 Size: 6295 ScaI AGT'ACT Cuts at: 4543 6255 4543 Size: 1712 4583 SfcI C'TryA_G Cuts at: 826 1045 2303 3643 4778 5459 5650 826 Size: 219 1258 1340 1135 681 191 1471 Fragments arranged by size: 1471 1340 1258 1135 681 219 191 SfiI GGCCn_nnn'nGGCC Cuts at: 2109 2109 Size: 6295 SfoI GGC'GCC Cuts at: 2073 2435 3367 3470 2073 Size: 362 932 103 4898 Fragments arranged by size: 4898 932 362 103 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6295 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6295 SmaI CCC'GGG Cuts at: 1872 2089 2116 2264 2868 2916 3113 3622 1872 Size: 217 27 148 604 48 197 509 4545 Fragments arranged by size: 4545 604 509 217 197 148 48 27 SmlI C'TyrA_G Cuts at: 820 1017 1943 4399 5300 5562 820 Size: 197 926 2456 901 262 1553 Fragments arranged by size: 2456 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 4086 493 Size: 3593 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 6295 SphI G_CATG'C Cuts at: 1132 3653 1132 Size: 2521 3774 SspI AAT'ATT Cuts at: 5 52 4219 5 Size: 47 4167 2081 Fragments arranged by size: 4167 2081 47 StuI AGG'CCT Cuts at: 1517 3039 1517 Size: 1522 4773 StyI C'CwwG_G Cuts at: 513 1065 2379 2453 3512 3734 513 Size: 552 1314 74 1059 222 3074 Fragments arranged by size: 3074 1314 1059 552 222 74 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3070 4322 4339 4492 4677 5122 325 Size: 1255 1490 1252 17 153 185 445 1498 Fragments arranged by size: 1498 1490 1255 1252 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3535 4541 6253 Size: 274 80 33 51 1443 1558 1006 1712 Cuts at: 6253 96 Size: 138 Fragments arranged by size: 1712 1558 1443 1006 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2045 2077 2127 2159 2449 2481 3479 3511 6255 Size: 32 50 32 290 32 998 32 2744 Cuts at: 6255 6287 2045 Size: 32 2053 Fragments arranged by size: 2744 2053 998 290 50 32 32 32 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6295 XbaI T'CTAG_A Cuts at: 3631 3631 Size: 6295 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6295 XmaI C'CCGG_G Cuts at: 1870 2087 2114 2262 2866 2914 3111 3620 1870 Size: 217 27 148 604 48 197 509 4545 Fragments arranged by size: 4545 604 509 217 197 148 48 27 XmnI GAAnn'nnTTC Cuts at: 4424 4424 Size: 6295 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2980 4103 276 Size: 53 83 186 936 1446 1123 2468 Fragments arranged by size: 2468 1446 1123 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NruI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI PsiI PspOMI PstI PvuI PvuII SacII SalI SbfI ScaI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI AscI AvrII BaeI BbvCI BfrBI BsiWI BsmBI BstXI BstZ17I EcoICRI EcoRV FalI FseI FspAI NsiI PacI PpuMI PspXI PsrI RsrII SacI SanDI SapI SexAI SrfI SwaI XcmI