FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2414, 151 aa 1>>>pF1KE2414 151 - 151 aa - 151 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.9889+/-0.000285; mu= -1.7212+/- 0.018 mean_var=228.2219+/-45.872, 0's: 0 Z-trim(125.5): 4 B-trim: 0 in 0/58 Lambda= 0.084898 statistics sampled from 49469 (49473) to 49469 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.58), width: 16 Scan time: 6.170 The best scores are: opt bits E(85289) NP_057223 (OMIM: 616244,616710) coiled-coil-helix- ( 151) 1030 136.9 1.2e-32 NP_001307256 (OMIM: 616244,616710) coiled-coil-hel ( 168) 1020 135.7 3e-32 NP_998885 (OMIM: 615048,615903,615911,616209) coil ( 142) 517 74.1 9.1e-14 NP_001288268 (OMIM: 615048,615903,615911,616209) c ( 149) 512 73.5 1.4e-13 >>NP_057223 (OMIM: 616244,616710) coiled-coil-helix-coil (151 aa) initn: 1030 init1: 1030 opt: 1030 Z-score: 707.3 bits: 136.9 E(85289): 1.2e-32 Smith-Waterman score: 1030; 100.0% identity (100.0% similar) in 151 aa overlap (1-151:1-151) 10 20 30 40 50 60 pF1KE2 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_057 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ 70 80 90 100 110 120 130 140 150 pF1KE2 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA ::::::::::::::::::::::::::::::: NP_057 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA 130 140 150 >>NP_001307256 (OMIM: 616244,616710) coiled-coil-helix-c (168 aa) initn: 1020 init1: 1020 opt: 1020 Z-score: 700.1 bits: 135.7 E(85289): 3e-32 Smith-Waterman score: 1020; 100.0% identity (100.0% similar) in 149 aa overlap (1-149:1-149) 10 20 30 40 50 60 pF1KE2 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQPCLYEIKQ 70 80 90 100 110 120 130 140 150 pF1KE2 FLECAQNQGDIKLCEGFNEVLKQCRLANGLA ::::::::::::::::::::::::::::: NP_001 FLECAQNQGDIKLCEGFNEVLKQCRLANGRIGLMKKFNLERWKISSHN 130 140 150 160 >>NP_998885 (OMIM: 615048,615903,615911,616209) coiled-c (142 aa) initn: 784 init1: 290 opt: 517 Z-score: 368.1 bits: 74.1 E(85289): 9.1e-14 Smith-Waterman score: 529; 57.2% identity (75.0% similar) in 152 aa overlap (1-151:1-139) 10 20 30 40 50 60 pF1KE2 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA ::::::: .:: :::: : :: :.::: ::::.. . : ::::::::: NP_998 MPRGSRSAASR---PASR-P-------AAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMA 10 20 30 40 70 80 90 100 110 pF1KE2 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQEPQGTQPAQQQQ-PCLYEIK ::::::::::::::..: :.::.:::::. ::..: . : : . : :. :: :::. NP_998 TTAAGVAVGSAVGHVMGSALTGAFSGGSS-EPSQPAVQ-QAPTPAAPQPLQMGPCAYEIR 50 60 70 80 90 100 120 130 140 150 pF1KE2 QFLECAQNQGDIKLCEGFNEVLKQCRLANGLA :::.:. .:.:..:::::.:.::::. .::. NP_998 QFLDCSTTQSDLSLCEGFSEALKQCKYYHGLSSLP 110 120 130 140 >>NP_001288268 (OMIM: 615048,615903,615911,616209) coile (149 aa) initn: 635 init1: 280 opt: 512 Z-score: 364.5 bits: 73.5 E(85289): 1.4e-13 Smith-Waterman score: 524; 55.7% identity (72.2% similar) in 158 aa overlap (1-151:1-146) 10 20 30 40 50 60 pF1KE2 MPRGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMA ::::::: .:: :::: : :: :.::: ::::.. . : ::::::::: NP_001 MPRGSRSAASR---PASR-P-------AAPSAHPPAHPPPSAAAPAPAPSGQPGLMAQMA 10 20 30 40 70 80 90 100 110 pF1KE2 TTAAGVAVGSAVGHTLGHAITGGFSGGSNAEPARPDITYQ---EPQGTQPAQQQQ----P ::::::::::::::..: :.::.:::::. ::..: . ::. :: : : NP_001 TTAAGVAVGSAVGHVMGSALTGAFSGGSS-EPSQPAVQQPLALYPQAPTPAAPQPLQMGP 50 60 70 80 90 100 120 130 140 150 pF1KE2 CLYEIKQFLECAQNQGDIKLCEGFNEVLKQCRLANGLA : :::.:::.:. .:.:..:::::.:.::::. .::. NP_001 CAYEIRQFLDCSTTQSDLSLCEGFSEALKQCKYYHGLSSLP 110 120 130 140 151 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 19:03:08 2016 done: Sat Nov 5 19:03:08 2016 Total Scan time: 6.170 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]