FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6736, 139 aa 1>>>pF1KB6736 139 - 139 aa - 139 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8864+/-0.000288; mu= 13.2315+/- 0.018 mean_var=54.6318+/-10.929, 0's: 0 Z-trim(117.8): 3 B-trim: 47 in 1/56 Lambda= 0.173521 statistics sampled from 30110 (30112) to 30110 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.742), E-opt: 0.2 (0.353), width: 16 Scan time: 4.700 The best scores are: opt bits E(85289) NP_000542 (OMIM: 144700,171300,193300,263400,60853 ( 213) 556 146.5 2e-35 NP_937799 (OMIM: 144700,171300,193300,263400,60853 ( 172) 336 91.4 6.3e-19 >>NP_000542 (OMIM: 144700,171300,193300,263400,608537) v (213 aa) initn: 556 init1: 556 opt: 556 Z-score: 757.0 bits: 146.5 E(85289): 2e-35 Smith-Waterman score: 556; 68.9% identity (82.8% similar) in 122 aa overlap (14-135:32-153) 10 20 30 40 pF1KB6 MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP ..:..:.:::: ::::::::: : : NP_000 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD ::::::::: :..:.::.:::.:::::::. :. :: :: :: :::..:.: ::::: NP_000 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRD 70 80 90 100 110 120 110 120 130 pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP : ::: :::::::::::: ::.:::.:::::: NP_000 AGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIV 130 140 150 160 170 180 NP_000 RSLYEDLEDHPNVQKDLERLTQERIAHQRMGD 190 200 210 >>NP_937799 (OMIM: 144700,171300,193300,263400,608537) v (172 aa) initn: 421 init1: 316 opt: 336 Z-score: 460.8 bits: 91.4 E(85289): 6.3e-19 Smith-Waterman score: 336; 62.2% identity (79.3% similar) in 82 aa overlap (14-95:32-113) 10 20 30 40 pF1KB6 MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP ..:..:.:::: ::::::::: : : NP_937 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD ::::::::: :..:.::.:::.:::::::. :. :: :: :: :::..: NP_937 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRVYTLKERC 70 80 90 100 110 120 110 120 130 pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP NP_937 LQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD 130 140 150 160 170 139 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:49:46 2016 done: Sat Nov 5 22:49:47 2016 Total Scan time: 4.700 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]