FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6736, 139 aa 1>>>pF1KB6736 139 - 139 aa - 139 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1821+/-0.000613; mu= 11.6437+/- 0.037 mean_var=55.8651+/-11.223, 0's: 0 Z-trim(110.6): 6 B-trim: 0 in 0/50 Lambda= 0.171595 statistics sampled from 11724 (11726) to 11724 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.36), width: 16 Scan time: 1.390 The best scores are: opt bits E(32554) CCDS2597.1 VHL gene_id:7428|Hs108|chr3 ( 213) 556 145.0 2.1e-35 CCDS2598.1 VHL gene_id:7428|Hs108|chr3 ( 172) 336 90.5 4.3e-19 >>CCDS2597.1 VHL gene_id:7428|Hs108|chr3 (213 aa) initn: 556 init1: 556 opt: 556 Z-score: 749.1 bits: 145.0 E(32554): 2.1e-35 Smith-Waterman score: 556; 68.9% identity (82.8% similar) in 122 aa overlap (14-135:32-153) 10 20 30 40 pF1KB6 MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP ..:..:.:::: ::::::::: : : CCDS25 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD ::::::::: :..:.::.:::.:::::::. :. :: :: :: :::..:.: ::::: CCDS25 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRGHLWLFRD 70 80 90 100 110 120 110 120 130 pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP : ::: :::::::::::: ::.:::.:::::: CCDS25 AGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCLQVVRSLVKPENYRRLDIV 130 140 150 160 170 180 CCDS25 RSLYEDLEDHPNVQKDLERLTQERIAHQRMGD 190 200 210 >>CCDS2598.1 VHL gene_id:7428|Hs108|chr3 (172 aa) initn: 421 init1: 316 opt: 336 Z-score: 456.2 bits: 90.5 E(32554): 4.3e-19 Smith-Waterman score: 336; 62.2% identity (79.3% similar) in 82 aa overlap (14-95:32-113) 10 20 30 40 pF1KB6 MPWRAGNGVGLEAQAGTQEAGPEEYCQEELGAEEEMAARAAWP ..:..:.:::: ::::::::: : : CCDS25 PRRAENWDEAEVGAEEAGVEEYGPEEDGGEESGAEESGPEESGPEELGAEEEMEAGRPRP 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB6 VLRSVNSRELSRIIICNHSPRIVLPVWLNYYGKLLPYLTLLPGRDFRIHNFRSHPWLFRD ::::::::: :..:.::.:::.:::::::. :. :: :: :: :::..: CCDS25 VLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRVYTLKERC 70 80 90 100 110 120 110 120 130 pF1KB6 ARTHDKLLVNQTELFVPSSNVNGQPVFANITLQCIP CCDS25 LQVVRSLVKPENYRRLDIVRSLYEDLEDHPNVQKDLERLTQERIAHQRMGD 130 140 150 160 170 139 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:49:46 2016 done: Sat Nov 5 22:49:46 2016 Total Scan time: 1.390 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]