FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6522, 85 aa 1>>>pF1KE6522 85 - 85 aa - 85 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9231+/-0.000522; mu= 9.3652+/- 0.031 mean_var=47.6310+/- 9.492, 0's: 0 Z-trim(111.5): 9 B-trim: 0 in 0/50 Lambda= 0.185836 statistics sampled from 12457 (12463) to 12457 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.788), E-opt: 0.2 (0.383), width: 16 Scan time: 1.220 The best scores are: opt bits E(32554) CCDS11855.1 IMPA2 gene_id:3613|Hs108|chr18 ( 288) 490 138.2 2e-33 CCDS47884.1 IMPA1 gene_id:3612|Hs108|chr8 ( 198) 208 62.5 8.2e-11 >>CCDS11855.1 IMPA2 gene_id:3613|Hs108|chr18 (288 aa) initn: 490 init1: 490 opt: 490 Z-score: 713.5 bits: 138.2 E(32554): 2e-33 Smith-Waterman score: 490; 100.0% identity (100.0% similar) in 77 aa overlap (1-77:1-77) 10 20 30 40 50 60 pF1KE6 MKPSGEDQAALAAGPWEECFQAAVQLALRAGQIIRKALTEEKRVSTKTSAADLVTETDHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS11 MKPSGEDQAALAAGPWEECFQAAVQLALRAGQIIRKALTEEKRVSTKTSAADLVTETDHL 10 20 30 40 50 60 70 80 pF1KE6 VEDLIISELRERFPSHRSPFSLVHM ::::::::::::::::: CCDS11 VEDLIISELRERFPSHRFIAEEAAASGAKCVLTHSPTWIIDPIDGTCNFVHRFPTVAVSI 70 80 90 100 110 120 >>CCDS47884.1 IMPA1 gene_id:3612|Hs108|chr8 (198 aa) initn: 228 init1: 208 opt: 208 Z-score: 307.6 bits: 62.5 E(32554): 8.2e-11 Smith-Waterman score: 208; 46.9% identity (76.6% similar) in 64 aa overlap (13-76:2-65) 10 20 30 40 50 60 pF1KE6 MKPSGEDQAALAAGPWEECFQAAVQLALRAGQIIRKALTEEKRVSTKTSAADLVTETDHL : ::.::.. :: :: .::... .:. .: : :.: .:::: ::. CCDS47 MADPWQECMDYAVTLARQAGEVVCEAIKNEMNVMLKSSPVDLVTATDQK 10 20 30 40 70 80 pF1KE6 VEDLIISELRERFPSHRSPFSLVHM :: ..:: ..:..::: CCDS47 VEKMLISSIKEKYPSHSFIGEESVAAGEKSILTDNPTWIIDPIDGTTNFVHRFPFVAVSI 50 60 70 80 90 100 85 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:04:19 2016 done: Tue Nov 8 14:04:19 2016 Total Scan time: 1.220 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]