FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5834, 459 aa 1>>>pF1KE5834 459 - 459 aa - 459 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2868+/-0.000458; mu= 12.7167+/- 0.029 mean_var=348.7342+/-79.729, 0's: 0 Z-trim(120.4): 132 B-trim: 3947 in 2/53 Lambda= 0.068679 statistics sampled from 35535 (35705) to 35535 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.419), width: 16 Scan time: 10.220 The best scores are: opt bits E(85289) NP_001307873 (OMIM: 400006,415000) RNA-binding mot ( 459) 3230 334.1 4.7e-91 XP_016885549 (OMIM: 400006,415000) PREDICTED: RNA- ( 435) 2971 308.4 2.4e-83 XP_011529739 (OMIM: 400006,415000) PREDICTED: RNA- ( 422) 2330 244.9 3.1e-64 NP_005049 (OMIM: 400006,415000) RNA-binding motif ( 496) 2331 245.1 3.2e-64 XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA- ( 385) 1825 194.8 3.5e-49 NP_001307874 (OMIM: 400006,415000) RNA-binding mot ( 356) 1577 170.2 8.3e-42 NP_002130 (OMIM: 300199,300238) RNA-binding motif ( 391) 1201 133.0 1.4e-30 NP_055284 (OMIM: 605444) RNA-binding motif protein ( 392) 902 103.3 1.2e-21 NP_001158275 (OMIM: 300199,300238) RNA-binding mot ( 196) 376 50.7 4.1e-06 NP_001287744 (OMIM: 602649) cold-inducible RNA-bin ( 168) 355 48.5 1.6e-05 XP_016881726 (OMIM: 602649) PREDICTED: cold-induci ( 168) 355 48.5 1.6e-05 XP_006722700 (OMIM: 602649) PREDICTED: cold-induci ( 172) 355 48.6 1.6e-05 NP_001271 (OMIM: 602649) cold-inducible RNA-bindin ( 172) 355 48.6 1.6e-05 XP_011525970 (OMIM: 602649) PREDICTED: cold-induci ( 202) 355 48.7 1.8e-05 NP_001287758 (OMIM: 602649) cold-inducible RNA-bin ( 297) 356 49.0 2e-05 NP_006734 (OMIM: 300027) RNA-binding protein 3 [Ho ( 157) 293 42.3 0.0011 >>NP_001307873 (OMIM: 400006,415000) RNA-binding motif p (459 aa) initn: 3230 init1: 3230 opt: 3230 Z-score: 1755.7 bits: 334.1 E(85289): 4.7e-91 Smith-Waterman score: 3230; 100.0% identity (100.0% similar) in 459 aa overlap (1-459:1-459) 10 20 30 40 50 60 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP 370 380 390 400 410 420 430 440 450 pF1KE5 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY ::::::::::::::::::::::::::::::::::::::: NP_001 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY 430 440 450 >>XP_016885549 (OMIM: 400006,415000) PREDICTED: RNA-bind (435 aa) initn: 2968 init1: 2968 opt: 2971 Z-score: 1617.2 bits: 308.4 E(85289): 2.4e-83 Smith-Waterman score: 2971; 96.6% identity (97.5% similar) in 438 aa overlap (22-459:3-435) 10 20 30 40 50 60 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD . :: .:. : . :::::::::::::::::::: XP_016 MRRCLKQYLGNMVPYQ-----KDRTSKSRGFAFITFENPAD 10 20 30 70 80 90 100 110 120 pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY 280 290 300 310 320 330 370 380 390 400 410 420 pF1KE5 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP 340 350 360 370 380 390 430 440 450 pF1KE5 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY ::::::::::::::::::::::::::::::::::::::: XP_016 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY 400 410 420 430 >>XP_011529739 (OMIM: 400006,415000) PREDICTED: RNA-bind (422 aa) initn: 3520 init1: 2309 opt: 2330 Z-score: 1274.1 bits: 244.9 E(85289): 3.1e-64 Smith-Waterman score: 2431; 90.5% identity (90.7% similar) in 399 aa overlap (1-362:1-399) 10 20 30 40 50 60 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 250 260 270 280 290 300 310 320 330 pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGY------------------------------ :::::::::::::::::::::::::::::: XP_011 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 310 320 330 340 350 360 340 350 360 370 380 pF1KE5 -------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA ::::::::::::::::::::::::::::::.: XP_011 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYATLFQKTVHITAEITWTGPKRGG 370 380 390 400 410 420 390 400 410 420 430 440 pF1KE5 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI XP_011 GG >>NP_005049 (OMIM: 400006,415000) RNA-binding motif prot (496 aa) initn: 2309 init1: 2309 opt: 2331 Z-score: 1274.0 bits: 245.1 E(85289): 3.2e-64 Smith-Waterman score: 3113; 92.5% identity (92.5% similar) in 491 aa overlap (1-454:1-491) 10 20 30 40 50 60 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR 250 260 270 280 290 300 310 320 330 pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGY------------------------------ :::::::::::::::::::::::::::::: NP_005 ETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYAYRDYGHSSWD 310 320 330 340 350 360 340 350 360 370 380 pF1KE5 -------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 EHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHA 370 380 390 400 410 420 390 400 410 420 430 440 pF1KE5 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_005 YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASI 430 440 450 460 470 480 450 pF1KE5 VDGGESRSEKGDSSRY ::::::::::: NP_005 VDGGESRSEKGDSSRY 490 >>XP_011529740 (OMIM: 400006,415000) PREDICTED: RNA-bind (385 aa) initn: 1779 init1: 1779 opt: 1825 Z-score: 1004.0 bits: 194.8 E(85289): 3.5e-49 Smith-Waterman score: 2542; 83.9% identity (83.9% similar) in 459 aa overlap (1-459:1-385) 10 20 30 40 50 60 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPAD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYAY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 RDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSSR :::::::::::::::: XP_011 RDNGHSNRDEHSSRGY-------------------------------------------- 250 310 320 330 340 350 360 pF1KE5 ETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRY :::::::::::::::::::::::::::::: XP_011 ------------------------------SYHDGYGEALGRDHSEHLSGSSYRDALQRY 260 270 280 370 380 390 400 410 420 pF1KE5 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNP 290 300 310 320 330 340 430 440 450 pF1KE5 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY ::::::::::::::::::::::::::::::::::::::: XP_011 PSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY 350 360 370 380 >>NP_001307874 (OMIM: 400006,415000) RNA-binding motif p (356 aa) initn: 1525 init1: 1525 opt: 1577 Z-score: 871.5 bits: 170.2 E(85289): 8.3e-42 Smith-Waterman score: 2203; 89.6% identity (89.6% similar) in 356 aa overlap (141-459:1-356) 120 130 140 150 160 170 pF1KE5 SARGSRGGTRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSA :::::::::::::::::::::::::::::: NP_001 MSYSRGLIPVKRGPSSRSGGPPPKKSAPSA 10 20 30 180 190 200 210 220 230 pF1KE5 VARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRD 40 50 60 70 80 90 240 250 260 270 280 290 pF1KE5 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYS 100 110 120 130 140 150 300 310 320 330 pF1KE5 RGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGY-------------------- :::::::::::::::::::::::::::::::::::::::: NP_001 RGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYA 160 170 180 190 200 210 340 350 360 370 pF1KE5 -----------------SYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPR ::::::::::::::::::::::::::::::::::::::::::: NP_001 YRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTSHGAPPARGPR 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE5 MSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREA 280 290 300 310 320 330 440 450 pF1KE5 CGSSSYVASIVDGGESRSEKGDSSRY :::::::::::::::::::::::::: NP_001 CGSSSYVASIVDGGESRSEKGDSSRY 340 350 >>NP_002130 (OMIM: 300199,300238) RNA-binding motif prot (391 aa) initn: 1123 init1: 393 opt: 1201 Z-score: 669.8 bits: 133.0 E(85289): 1.4e-30 Smith-Waterman score: 1333; 51.9% identity (68.1% similar) in 464 aa overlap (1-459:1-391) 10 20 30 40 50 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA :::::.:::::::::: ::::: :.:::::.: : ::::.::: :.:::::::.:::.:: NP_002 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT :::.::.::::::: ::::::::: ::::.:: :: :: :.:.: .::..::. ::: NP_002 DAKDAARDMNGKSLDGKAIKVEQATKPSFESG-RRGPPPPPRSRGPPRGLRGGRGGSGGT 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG :: ::. ::.:::::. ...:: ::: .:::::: ::::::::.::::. .::.: :: NP_002 RGP-PSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRSAPSGPVRSSSGMG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 SQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSRGYA ...:.:. :..:: :::: . : :. .: : :::.: NP_002 GRAPVSRGRDSYGGPPRREPLPSRRDVYLSPRDDGYST---------------------- 180 190 200 210 240 250 260 270 280 290 pF1KE5 YRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDYGHSRRDESYSRGYRNRRSS .: .::: : :::.::::::: : ..::::::: :: NP_002 --------KDSYSSRDYP---SSRDTRDYAPPPRDYTYRDYGHS--------------SS 220 230 240 250 300 310 320 330 340 350 pF1KE5 RETREYAPPSRGHGYRDYGHSRRHESYSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQR :. :: ::::: .::::. ::.:.: ::.::::. . NP_002 RD--------------DYP--------SRGYSDRDGYGR--DRDYSDHPSGGSYRDSYES 260 270 280 360 370 380 390 400 410 pF1KE5 YGTSHGAPPARGPRMSYGGSTCHA-YSNTRDRYGRSWESYSSC-GDFHYCDREHVCRKDQ ::.:..:::.::: :::::. . ::..:: :: : .:::: .:.. :..: :... NP_002 YGNSRSAPPTRGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSSRSDLYSSGRDRVGRQER 290 300 310 320 330 340 420 430 440 450 pF1KE5 RNPPSLGRVLPDPREACGSSSYVASIVDG-GESRSEKGDS-SRY :::. : : ::.. .::: : : : :::..: . ::: NP_002 GLPPSMERGYPPPRDSYSSSSRGAPRGGGRGGSRSDRGGGRSRY 350 360 370 380 390 >>NP_055284 (OMIM: 605444) RNA-binding motif protein, X- (392 aa) initn: 629 init1: 280 opt: 902 Z-score: 509.7 bits: 103.3 E(85289): 1.2e-21 Smith-Waterman score: 923; 47.3% identity (65.9% similar) in 393 aa overlap (1-381:1-370) 10 20 30 40 50 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA :::::.:::::::::: ::.:: :.: :::.: : ::::.::: :.:::::::.:::.:: NP_055 MVEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 DAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGT ::: ::.::::::: :::::: :: ::.:.:. : :: ::.: : ::..::. :: NP_055 DAKAAARDMNGKSLDGKAIKVAQATKPAFESSRRGPPPPRSRGR-PR-FLRGTRGGGGGP 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 RGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMG : ::. : :::::: :. . ::. .:.:::: : :::::..:::. ::: : : NP_055 RR-SPSRGGPDDDGGYTADFDLRPSRAPMPMKRGPPPRRVGPPPKRAAPSGPARS-SGGG 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE5 SQG-PMSQR-RENYGVPPRRATISSWRNDRMSTRHDGYATNDG-NHPSCQETRDYAPPSR .: .. : :..:. :::: . :. .. : .::.. :: . . .: : .:: NP_055 MRGRALAVRGRDGYSGPPRREPLPPRRDPYLGPRDEGYSSRDGYSSRDYREPRGFAPSPG 180 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 GYAYRDNGHSN-RDEHSSRGY--RNHRSSRETRDYAPP-SRGHAYRDYGHSRRDESYSRG :..:: :::. ::. ::: :. ..:. :::. ::: .: . :::.. NP_055 EYTHRDYGHSSVRDDCPLRGYSDRDGYGGRD-RDYGDHLSRG------SHREPFESYGE- 240 250 260 270 280 300 310 320 330 340 pF1KE5 YRNRRSSRETREYAPPSRGHG--YRDY-GHSRRHESYSRGY-SYHDGYGEALGRDHSEHL :. .: : ::: : : :..: :.: ..:: : :: ..::.. ....: NP_055 LRGAAPGRGT----PPSYGGGGRYEEYRGYS--PDAYSGGRDSYSSSYGRSDRYSRGRHR 290 300 310 320 330 340 350 360 370 380 390 400 pF1KE5 SGSSYRDALQRYGTSHGAPPARGPRMSYGGSTCHAYSNTRDRYGRSWESYSSCGDFHYCD : : . .: :: : ::. : : NP_055 VGRPDRG--LSLSMERGCPPQRD---SYSRSGCRVPRGGGRLGGRLERGGGRSRY 350 360 370 380 390 410 420 430 440 450 pF1KE5 REHVCRKDQRNPPSLGRVLPDPREACGSSSYVASIVDGGESRSEKGDSSRY >>NP_001158275 (OMIM: 300199,300238) RNA-binding motif p (196 aa) initn: 368 init1: 222 opt: 376 Z-score: 230.7 bits: 50.7 E(85289): 4.1e-06 Smith-Waterman score: 376; 74.7% identity (88.0% similar) in 83 aa overlap (1-81:1-83) 10 20 30 40 50 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA :::::.:::::::::: ::::: :.:::::.: : ::::.::: :.:::::::.:::.:: NP_001 MVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 DAKNAAKDMNGKSL-HGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGG :::.::.::::: : : . : .: NP_001 DAKDAARDMNGKLLYHVEEIVMEVHLEGNRCPLVEMFICPQEMMGILLKTAIQAEITQVL 70 80 90 100 110 120 >>NP_001287744 (OMIM: 602649) cold-inducible RNA-binding (168 aa) initn: 244 init1: 168 opt: 355 Z-score: 220.1 bits: 48.5 E(85289): 1.6e-05 Smith-Waterman score: 355; 44.7% identity (67.6% similar) in 170 aa overlap (4-169:2-166) 10 20 30 40 50 pF1KE5 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPA :. ::::.:::. .:::. :. ::.:.: ::::...::: :..::::.:.:::: NP_001 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENID 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 DAKNAAKDMNGKSLHGKAIKVEQAKKPS-FQSGGRRRPPASSRNRSPSGSLRSARG-SRG :::.: :::::. :. :.:.:: : : .: : : :..:. .: :. :: ::: NP_001 DAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRG-RGFSRG 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 G-TRGWLPSHEGHLDDGGYTPDLKMSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNS : ::. ... . .::: . . ::. . : :.::.: . : : NP_001 GGDRGY-GGNRFESRSGGYGGSRDYYSSRSQ---SGGYSDRSSGGSYRDSYDSYG 120 130 140 150 160 180 190 200 210 220 230 pF1KE5 WMGSQGPMSQRRENYGVPPRRATISSWRNDRMSTRHDGYATNDGNHPSCQETRDYAPPSR 459 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 07:05:49 2016 done: Tue Nov 8 07:05:51 2016 Total Scan time: 10.220 Total Display time: 0.060 Function used was FASTA [36.3.4 Apr, 2011]