FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6515, 153 aa 1>>>pF1KE6515 153 - 153 aa - 153 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9384+/-0.000259; mu= 15.1641+/- 0.016 mean_var=63.9518+/-12.432, 0's: 0 Z-trim(121.1): 2 B-trim: 347 in 2/54 Lambda= 0.160379 statistics sampled from 37211 (37213) to 37211 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.436), width: 16 Scan time: 4.140 The best scores are: opt bits E(85289) NP_004114 (OMIM: 137240) gastric inhibitory polype ( 153) 1001 238.9 2.4e-63 NP_002045 (OMIM: 138030) glucagon preproprotein [H ( 180) 143 40.4 0.0016 >>NP_004114 (OMIM: 137240) gastric inhibitory polypeptid (153 aa) initn: 1001 init1: 1001 opt: 1001 Z-score: 1258.2 bits: 238.9 E(85289): 2.4e-63 Smith-Waterman score: 1001; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153) 10 20 30 40 50 60 pF1KE6 MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEGTFISD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 YSIAMDKIHQQDFVNWLLAQKGKKNDWKHNITQREARALELASQANRKEEEAVEPQSSPA 70 80 90 100 110 120 130 140 150 pF1KE6 KNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR ::::::::::::::::::::::::::::::::: NP_004 KNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR 130 140 150 >>NP_002045 (OMIM: 138030) glucagon preproprotein [Homo (180 aa) initn: 228 init1: 111 opt: 143 Z-score: 184.3 bits: 40.4 E(85289): 0.0016 Smith-Waterman score: 143; 29.5% identity (64.2% similar) in 95 aa overlap (22-114:27-117) 10 20 30 40 50 pF1KE6 MVATKTFALLLLSLFLAVGLGEKKEGHFSALPSLPVGSHAKVSSPQPRGPRYAEG :.: ::: . :... ... . :...: NP_002 MKSIYFVAGLFVMLVQGSWQRSLQDTEEKSRSFSASQADPLSDPDQMNEDK----RHSQG 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 TFISDYSIAMDKIHQQDFVNWLLAQKGKKNDW--KHNITQREARALELASQANRKEEEAV :: :::: .:. . ::::.::. : ..:. .:. .:.:.. .. .. : .:. NP_002 TFTSDYSKYLDSRRAQDFVQWLMNTKRNRNNIAKRHDEFERHAEGTFTSDVSSYLEGQAA 60 70 80 90 100 110 120 130 140 150 pF1KE6 EPQSSPAKNPSDEDLLRDLLIQELLACLLDQTNLCRLRSR . NP_002 KEFIAWLVKGRGRRDFPEEVAIVEELGRRHADGSFSDEMNTILDNLAARDFINWLIQTKI 120 130 140 150 160 170 153 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 14:00:26 2016 done: Tue Nov 8 14:00:27 2016 Total Scan time: 4.140 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]