FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE9641, 396 aa 1>>>pF1KE9641 396 - 396 aa - 396 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.1058+/-0.000444; mu= -3.5217+/- 0.028 mean_var=291.2784+/-60.536, 0's: 0 Z-trim(118.9): 30 B-trim: 491 in 1/54 Lambda= 0.075148 statistics sampled from 32324 (32354) to 32324 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.379), width: 16 Scan time: 7.150 The best scores are: opt bits E(85289) NP_004897 (OMIM: 605442) pre-mRNA-splicing regulat ( 396) 2533 287.9 2.8e-77 NP_001257460 (OMIM: 605442) pre-mRNA-splicing regu ( 396) 2533 287.9 2.8e-77 XP_016867003 (OMIM: 605442) PREDICTED: pre-mRNA-sp ( 413) 2533 288.0 2.9e-77 XP_016867004 (OMIM: 605442) PREDICTED: pre-mRNA-sp ( 369) 2360 269.2 1.2e-71 NP_690596 (OMIM: 605442) pre-mRNA-splicing regulat ( 151) 963 117.4 2.3e-26 NP_690597 (OMIM: 605442) pre-mRNA-splicing regulat ( 151) 963 117.4 2.3e-26 NP_001257461 (OMIM: 605442) pre-mRNA-splicing regu ( 170) 963 117.4 2.6e-26 NP_001257462 (OMIM: 605442) pre-mRNA-splicing regu ( 170) 963 117.4 2.6e-26 XP_016867005 (OMIM: 605442) PREDICTED: pre-mRNA-sp ( 187) 963 117.5 2.8e-26 >>NP_004897 (OMIM: 605442) pre-mRNA-splicing regulator W (396 aa) initn: 2533 init1: 2533 opt: 2533 Z-score: 1508.4 bits: 287.9 E(85289): 2.8e-77 Smith-Waterman score: 2533; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396) 10 20 30 40 50 60 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH 310 320 330 340 350 360 370 380 390 pF1KE9 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL :::::::::::::::::::::::::::::::::::: NP_004 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL 370 380 390 >>NP_001257460 (OMIM: 605442) pre-mRNA-splicing regulato (396 aa) initn: 2533 init1: 2533 opt: 2533 Z-score: 1508.4 bits: 287.9 E(85289): 2.8e-77 Smith-Waterman score: 2533; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:1-396) 10 20 30 40 50 60 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE9 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE9 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE9 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH 310 320 330 340 350 360 370 380 390 pF1KE9 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL :::::::::::::::::::::::::::::::::::: NP_001 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL 370 380 390 >>XP_016867003 (OMIM: 605442) PREDICTED: pre-mRNA-splici (413 aa) initn: 2533 init1: 2533 opt: 2533 Z-score: 1508.1 bits: 288.0 E(85289): 2.9e-77 Smith-Waterman score: 2533; 100.0% identity (100.0% similar) in 396 aa overlap (1-396:18-413) 10 20 30 40 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGK ::::::::::::::::::::::::::::::::::::::::::: XP_016 MRGKASVSKFSKLTGFKMTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE9 YTDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YTDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE9 SVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRM 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE9 LIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 LIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTIL 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE9 VLQQQLKETRQQLAQYQQQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 VLQQQLKETRQQLAQYQQQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSS 250 260 270 280 290 300 290 300 310 320 330 340 pF1KE9 RQRTSGSGFHREGNTTEDDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 RQRTSGSGFHREGNTTEDDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPT 310 320 330 340 350 360 350 360 370 380 390 pF1KE9 GSENSLTHQSNDTDSSHDPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL ::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GSENSLTHQSNDTDSSHDPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL 370 380 390 400 410 >>XP_016867004 (OMIM: 605442) PREDICTED: pre-mRNA-splici (369 aa) initn: 2360 init1: 2360 opt: 2360 Z-score: 1407.4 bits: 269.2 E(85289): 1.2e-71 Smith-Waterman score: 2360; 99.7% identity (100.0% similar) in 369 aa overlap (28-396:1-369) 10 20 30 40 50 60 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE .:::::::::::::::::::::::::::::::: XP_016 MRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 10 20 30 70 80 90 100 110 120 pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 40 50 60 70 80 90 130 140 150 160 170 180 pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI 100 110 120 130 140 150 190 200 210 220 230 240 pF1KE9 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 AQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTILVLQQQLKETRQQLAQYQ 160 170 180 190 200 210 250 260 270 280 290 300 pF1KE9 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QQQSQASAPSTSRTTASEPVEQSEATSKDCSRLTNGPSNGSSSRQRTSGSGFHREGNTTE 220 230 240 250 260 270 310 320 330 340 350 360 pF1KE9 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DDFPSSPGNGNKSSNSSEERTGRGGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSH 280 290 300 310 320 330 370 380 390 pF1KE9 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL :::::::::::::::::::::::::::::::::::: XP_016 DPQEEKAVSGKGNRTVGSRHVQNGLDSSVNVQGSVL 340 350 360 >>NP_690596 (OMIM: 605442) pre-mRNA-splicing regulator W (151 aa) initn: 963 init1: 963 opt: 963 Z-score: 594.2 bits: 117.4 E(85289): 2.3e-26 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI :::::::::::::::::::::::::::::: NP_690 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 130 140 150 >>NP_690597 (OMIM: 605442) pre-mRNA-splicing regulator W (151 aa) initn: 963 init1: 963 opt: 963 Z-score: 594.2 bits: 117.4 E(85289): 2.3e-26 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_690 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI :::::::::::::::::::::::::::::: NP_690 FLKMKGELEQTKDKLEQAQNELSAWKFTPDR 130 140 150 >>NP_001257461 (OMIM: 605442) pre-mRNA-splicing regulato (170 aa) initn: 983 init1: 963 opt: 963 Z-score: 593.5 bits: 117.4 E(85289): 2.6e-26 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI :::::::::::::::::::::::::::::: NP_001 FLKMKGELEQTKDKLEQAQNELSAWKFTPDRGLMASDYSEEVATSEKFPF 130 140 150 160 170 >>NP_001257462 (OMIM: 605442) pre-mRNA-splicing regulato (170 aa) initn: 983 init1: 963 opt: 963 Z-score: 593.5 bits: 117.4 E(85289): 2.6e-26 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:1-150) 10 20 30 40 50 60 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGKYTDLNSNDVTGLRESEE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE9 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQPSVAQLRSTMVDPAINLF 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE9 FLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRMLIQENQELGRQLSQGRI :::::::::::::::::::::::::::::: NP_001 FLKMKGELEQTKDKLEQAQNELSAWKFTPDRGLMASDYSEEVATSEKFPF 130 140 150 160 170 >>XP_016867005 (OMIM: 605442) PREDICTED: pre-mRNA-splici (187 aa) initn: 983 init1: 963 opt: 963 Z-score: 592.9 bits: 117.5 E(85289): 2.8e-26 Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 150 aa overlap (1-150:18-167) 10 20 30 40 pF1KE9 MTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGK ::::::::::::::::::::::::::::::::::::::::::: XP_016 MRGKASVSKFSKLTGFKMTNEEPLPKKVRLSETDFKVMARDELILRWKQYEAYVQALEGK 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE9 YTDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 YTDLNSNDVTGLRESEEKLKQQQQESARRENILVMRLATKEQEMQECTTQIQYLKQVQQP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE9 SVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDSQTGKKLMAKCRM ::::::::::::::::::::::::::::::::::::::::::::::: XP_016 SVAQLRSTMVDPAINLFFLKMKGELEQTKDKLEQAQNELSAWKFTPDRGLMASDYSEEVA 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE9 LIQENQELGRQLSQGRIAQLEAELALQKKYSEELKSSQDELNDFIIQLDEEVEGMQSTIL XP_016 TSEKFPF 396 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:23:24 2016 done: Sun Nov 6 06:23:25 2016 Total Scan time: 7.150 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]