FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4312, 322 aa 1>>>pF1KE4312 322 - 322 aa - 322 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.2577+/-0.000817; mu= 15.5621+/- 0.049 mean_var=57.3002+/-11.379, 0's: 0 Z-trim(105.8): 31 B-trim: 0 in 0/52 Lambda= 0.169432 statistics sampled from 8638 (8651) to 8638 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.266), width: 16 Scan time: 2.520 The best scores are: opt bits E(32554) CCDS41338.1 SCP2 gene_id:6342|Hs108|chr1 ( 322) 2164 537.1 6.8e-153 CCDS53317.1 SCP2 gene_id:6342|Hs108|chr1 ( 503) 2131 529.2 2.7e-150 CCDS81325.1 SCP2 gene_id:6342|Hs108|chr1 ( 366) 1722 429.1 2.5e-120 CCDS53319.1 SCP2 gene_id:6342|Hs108|chr1 ( 466) 1689 421.1 8.4e-118 CCDS53318.1 SCP2 gene_id:6342|Hs108|chr1 ( 523) 1689 421.1 9.3e-118 CCDS572.1 SCP2 gene_id:6342|Hs108|chr1 ( 547) 1689 421.1 9.7e-118 >>CCDS41338.1 SCP2 gene_id:6342|Hs108|chr1 (322 aa) initn: 2164 init1: 2164 opt: 2164 Z-score: 2858.4 bits: 537.1 E(32554): 6.8e-153 Smith-Waterman score: 2164; 100.0% identity (100.0% similar) in 322 aa overlap (1-322:1-322) 10 20 30 40 50 60 pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI 250 260 270 280 290 300 310 320 pF1KE4 NPSGGLISKGHPLGATGGHSCS :::::::::::::::::::::: CCDS41 NPSGGLISKGHPLGATGGHSCS 310 320 >>CCDS53317.1 SCP2 gene_id:6342|Hs108|chr1 (503 aa) initn: 2123 init1: 2123 opt: 2131 Z-score: 2811.7 bits: 529.2 E(32554): 2.7e-150 Smith-Waterman score: 2131; 98.8% identity (99.4% similar) in 322 aa overlap (1-322:1-322) 10 20 30 40 50 60 pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 CVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFG 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 YAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 CPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 ARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVI 250 260 270 280 290 300 310 320 pF1KE4 NPSGGLISKGHPLGATGGHSCS ::::::::::::::::: .:. CCDS53 NPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYK 310 320 330 340 350 360 >>CCDS81325.1 SCP2 gene_id:6342|Hs108|chr1 (366 aa) initn: 1722 init1: 1722 opt: 1722 Z-score: 2273.6 bits: 429.1 E(32554): 2.5e-120 Smith-Waterman score: 1981; 87.6% identity (87.6% similar) in 354 aa overlap (13-322:13-366) 10 20 30 40 50 60 pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA :::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA 10 20 30 40 50 60 70 pF1KE4 CVGYVFG--------------------------------------------VAECVLALG ::::::: ::::::::: CCDS81 CVGYVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALG 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE4 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE4 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE4 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE4 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS81 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT 310 320 330 340 350 360 320 pF1KE4 GGHSCS :::::: CCDS81 GGHSCS >>CCDS53319.1 SCP2 gene_id:6342|Hs108|chr1 (466 aa) initn: 1681 init1: 1681 opt: 1689 Z-score: 2228.4 bits: 421.1 E(32554): 8.4e-118 Smith-Waterman score: 1689; 98.4% identity (99.2% similar) in 256 aa overlap (67-322:30-285) 40 50 60 70 80 90 pF1KE4 DLAEEAGKKALADAQIPYSAVDQACVGYVFGVAECVLALGFEKMSKGSLGIKFSDRTIPT :::::::::::::::::::::::::::::: CCDS53 MTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALGFEKMSKGSLGIKFSDRTIPT 10 20 30 40 50 100 110 120 130 140 150 pF1KE4 DKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 DKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQF 60 70 80 90 100 110 160 170 180 190 200 210 pF1KE4 QDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 QDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMM 120 130 140 150 160 170 220 230 240 250 260 270 pF1KE4 TDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 TDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALG 180 190 200 210 220 230 280 290 300 310 320 pF1KE4 LCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGGHSCS ::::::::::::::::::::::::::::::::::::::::: .:. CCDS53 LCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQ 240 250 260 270 280 290 CCDS53 VPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEI 300 310 320 330 340 350 >>CCDS53318.1 SCP2 gene_id:6342|Hs108|chr1 (523 aa) initn: 1960 init1: 1681 opt: 1689 Z-score: 2227.6 bits: 421.1 E(32554): 9.3e-118 Smith-Waterman score: 1942; 88.0% identity (90.9% similar) in 342 aa overlap (1-322:1-342) 10 20 30 40 50 pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKK---------ALADAQ ::::::::::::::::::::::::::::::::::::::::::: . .:. . CCDS53 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGDSTCGQRAIYHSLGMTG 10 20 30 40 50 60 60 70 80 90 100 pF1KE4 IPYSAVDQACVG---YVF--------GVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHV :: :.. :. .: :::::::::::::::::::::::::::::::::: CCDS53 IPIINVNNNCATGSTALFMARQLIQGGVAECVLALGFEKMSKGSLGIKFSDRTIPTDKHV 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE4 DLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 DLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEHFAKIGWKNHKHSVNNPYSQFQDEY 130 140 150 160 170 180 170 180 190 200 210 220 pF1KE4 SLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 SLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEAFVQKYGLQSKAVEILAQEMMTDLP 190 200 210 220 230 240 230 240 250 260 270 280 pF1KE4 SSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS53 SSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDIDVIELHDCFSTNELLTYEALGLCPE 250 260 270 280 290 300 290 300 310 320 pF1KE4 GQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGGHSCS ::::::::::::::::::::::::::::::::::::: .:. CCDS53 GQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGATGLAQCAELCWQLRGEAGKRQVPGA 310 320 330 340 350 360 CCDS53 KVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIEAVPTSSASDGFKANLVFKEIEKKL 370 380 390 400 410 420 >>CCDS572.1 SCP2 gene_id:6342|Hs108|chr1 (547 aa) initn: 1681 init1: 1681 opt: 1689 Z-score: 2227.3 bits: 421.1 E(32554): 9.7e-118 Smith-Waterman score: 1948; 86.4% identity (87.0% similar) in 354 aa overlap (13-322:13-366) 10 20 30 40 50 60 pF1KE4 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA :::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 MSSSPWEPATLRRVFVVGVGMTKFVKPGAENSRDYPDLAEEAGKKALADAQIPYSAVDQA 10 20 30 40 50 60 70 pF1KE4 CVGYVFG--------------------------------------------VAECVLALG ::::::: ::::::::: CCDS57 CVGYVFGDSTCGQRAIYHSLGMTGIPIINVNNNCATGSTALFMARQLIQGGVAECVLALG 70 80 90 100 110 120 80 90 100 110 120 130 pF1KE4 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 FEKMSKGSLGIKFSDRTIPTDKHVDLLINKYGLSAHPVAPQMFGYAGKEHMEKYGTKIEH 130 140 150 160 170 180 140 150 160 170 180 190 pF1KE4 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 FAKIGWKNHKHSVNNPYSQFQDEYSLDEVMASKEVFDFLTILQCCPTSDGAAAAILASEA 190 200 210 220 230 240 200 210 220 230 240 250 pF1KE4 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 FVQKYGLQSKAVEILAQEMMTDLPSSFEEKSIIKMVGFDMSKEAARKCYEKSGLTPNDID 250 260 270 280 290 300 260 270 280 290 300 310 pF1KE4 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS57 VIELHDCFSTNELLTYEALGLCPEGQGATLVDRGDNTYGGKWVINPSGGLISKGHPLGAT 310 320 330 340 350 360 320 pF1KE4 GGHSCS : .:. CCDS57 GLAQCAELCWQLRGEAGKRQVPGAKVALQHNLGIGGAVVVTLYKMGFPEAASSFRTHQIE 370 380 390 400 410 420 322 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:25:14 2016 done: Sat Nov 5 23:25:14 2016 Total Scan time: 2.520 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]