FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3992, 385 aa 1>>>pF1KE3992 385 - 385 aa - 385 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7801+/-0.000853; mu= 14.8123+/- 0.051 mean_var=77.8501+/-15.513, 0's: 0 Z-trim(108.2): 18 B-trim: 199 in 1/49 Lambda= 0.145360 statistics sampled from 10073 (10085) to 10073 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.31), width: 16 Scan time: 2.740 The best scores are: opt bits E(32554) CCDS56377.1 DCP2 gene_id:167227|Hs108|chr5 ( 385) 2690 573.5 1.1e-163 CCDS34210.1 DCP2 gene_id:167227|Hs108|chr5 ( 420) 2204 471.6 5.7e-133 >>CCDS56377.1 DCP2 gene_id:167227|Hs108|chr5 (385 aa) initn: 2690 init1: 2690 opt: 2690 Z-score: 3052.1 bits: 573.5 E(32554): 1.1e-163 Smith-Waterman score: 2690; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385) 10 20 30 40 50 60 pF1KE3 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 YNNHSEMSDLLKGKKCEKKLHPRKLQDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS56 YNNHSEMSDLLKGKKCEKKLHPRKLQDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHC 310 320 330 340 350 360 370 380 pF1KE3 KFPFSSRAFLSFKFDHNAIMKILDL ::::::::::::::::::::::::: CCDS56 KFPFSSRAFLSFKFDHNAIMKILDL 370 380 >>CCDS34210.1 DCP2 gene_id:167227|Hs108|chr5 (420 aa) initn: 2201 init1: 2201 opt: 2204 Z-score: 2500.7 bits: 471.6 E(32554): 5.7e-133 Smith-Waterman score: 2592; 91.6% identity (91.6% similar) in 417 aa overlap (1-382:1-417) 10 20 30 40 50 60 pF1KE3 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 METKRVEIPGSVLDDLCSRFILHIPSEERDNAIRVCFQIELAHWFYLDFYMQNTPGLPQC 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 GIRDFAKAVFSHCPFLLPQGEDVEKVLDEWKEYKMGVPTYGAIILDETLENVLLVQGYLA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 KSGWGFPKGKVNKEEAPHDCAAREVFEETGFDIKDYICKDDYIELRINDQLARLYIIPGI 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 PKDTKFNPKTRREIRNIEWFSIEKLPCHRNDMTPKSKLGLAPNKFFMAIPFIRPLRDWLS 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 RRFGDSSDSDNGFSSTGSTPAKPTVEKLSRTKFRHSQQLFPDGSPGDQWVKHRQPLQQKP 250 260 270 280 290 300 310 320 pF1KE3 YNNHSEMSDLLKGK-----------------------------------KCEKKLHPRKL :::::::::::::: ::::::::::: CCDS34 YNNHSEMSDLLKGKNQSMRGNGRKQYQDSPNQKKRTNGLQPAKQQNSLMKCEKKLHPRKL 310 320 330 340 350 360 330 340 350 360 370 380 pF1KE3 QDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHCKFPFSSRAFLSFKFDHNAIMKILDL ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 QDNFETDAVYDLPSSSEDQLLEHAEGQPVACNGHCKFPFSSRAFLSFKFDHNAIMKILDL 370 380 390 400 410 420 385 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 22:42:47 2016 done: Sat Nov 5 22:42:47 2016 Total Scan time: 2.740 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]