FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5322, 264 aa
  1>>>pF1KE5322 264 - 264 aa - 264 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5414+/-0.000704; mu= 6.9455+/- 0.043
 mean_var=169.0465+/-33.323, 0's: 0 Z-trim(116.0): 7  B-trim: 68 in 1/53
 Lambda= 0.098644
 statistics sampled from 16533 (16536) to 16533 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.824), E-opt: 0.2 (0.508), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS54174.1 ENDOV gene_id:284131|Hs108|chr17       ( 264) 1832 271.6 3.8e-73
CCDS54173.1 ENDOV gene_id:284131|Hs108|chr17       ( 237) 1599 238.4 3.4e-63
CCDS54172.1 ENDOV gene_id:284131|Hs108|chr17       ( 282) 1096 166.9 1.4e-41


>>CCDS54174.1 ENDOV gene_id:284131|Hs108|chr17            (264 aa)
 initn: 1832 init1: 1832 opt: 1832  Z-score: 1426.6  bits: 271.6 E(32554): 3.8e-73
Smith-Waterman score: 1832; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)

               10        20        30        40        50        60
pF1KE5 MALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSGLQRVGGVDVSFVKGDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSGLQRVGGVDVSFVKGDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VRACASLVVLSFPELEVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VRACASLVVLSFPELEVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NALHKEKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NALHKEKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CCCRFRIPEPVRQADICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSGEGQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CCCRFRIPEPVRQADICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSGEGQPP
              190       200       210       220       230       240

              250       260    
pF1KE5 QDHSPGPRTAPRPGSQEQAGKDWQ
       ::::::::::::::::::::::::
CCDS54 QDHSPGPRTAPRPGSQEQAGKDWQ
              250       260    

>>CCDS54173.1 ENDOV gene_id:284131|Hs108|chr17            (237 aa)
 initn: 1599 init1: 1599 opt: 1599  Z-score: 1248.1  bits: 238.4 E(32554): 3.4e-63
Smith-Waterman score: 1599; 100.0% identity (100.0% similar) in 234 aa overlap (1-234:1-234)

               10        20        30        40        50        60
pF1KE5 MALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSGLQRVGGVDVSFVKGDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSGLQRVGGVDVSFVKGDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 VRACASLVVLSFPELEVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VRACASLVVLSFPELEVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 NALHKEKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NALHKEKIRLLQTRGDSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 CCCRFRIPEPVRQADICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSGEGQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::      
CCDS54 CCCRFRIPEPVRQADICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSALC   
              190       200       210       220       230          

              250       260    
pF1KE5 QDHSPGPRTAPRPGSQEQAGKDWQ

>>CCDS54172.1 ENDOV gene_id:284131|Hs108|chr17            (282 aa)
 initn: 1096 init1: 1096 opt: 1096  Z-score: 860.2  bits: 166.9 E(32554): 1.4e-41
Smith-Waterman score: 1413; 83.1% identity (83.1% similar) in 266 aa overlap (14-234:14-279)

               10        20        30        40        50        60
pF1KE5 MALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSGLQRVGGVDVSFVKGDS
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALEAAGGPPEETLSLWKREQARLKAHVVDRDTEAWQRDPAFSGLQRVGGVDVSFVKGDS
               10        20        30        40        50        60

               70                                                  
pF1KE5 VRACASLVVLSFPELEV-------------------------------------------
       :::::::::::::::::                                           
CCDS54 VRACASLVVLSFPELEVVYEESRMVSLTAPYVSGFLAFREVPFLLELVQQLREKEPGLMP
               70        80        90       100       110       120

          80        90       100       110       120       130     
pF1KE5 --LLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHKEKIRLLQTRG
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QVLLVDGNGVLHHRGFGVACHLGVLTDLPCVGVAKKLLQVDGLENNALHKEKIRLLQTRG
              130       140       150       160       170       180

         140       150       160       170       180       190     
pF1KE5 DSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRFRIPEPVRQAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DSFPLLGDSGTVLGMALRSHDRSTRPLYISVGHRMSLEAAVRLTCCCCRFRIPEPVRQAD
              190       200       210       220       230       240

         200       210       220       230       240       250     
pF1KE5 ICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSGEGQPPQDHSPGPRTAPRPGS
       :::::::::::::::::::::::::::::::::::::::                     
CCDS54 ICSREHIRKSLGLPGPPTPRSPKAQRPVACPKGDSGESSALC                  
              250       260       270       280                    

         260    
pF1KE5 QEQAGKDWQ




264 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 23:46:54 2016 done: Mon Nov  7 23:46:54 2016
 Total Scan time:  2.800 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]