FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3081, 243 aa
  1>>>pF1KE3081 243 - 243 aa - 243 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1026+/-0.000255; mu= 11.6498+/- 0.016
 mean_var=96.5017+/-19.112, 0's: 0 Z-trim(122.5): 2  B-trim: 2423 in 1/58
 Lambda= 0.130559
 statistics sampled from 40664 (40666) to 40664 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.806), E-opt: 0.2 (0.477), width:  16
 Scan time:  8.230

The best scores are:                                      opt bits E(85289)
NP_663634 (OMIM: 608273) interleukin-27 subunit al ( 243) 1635 317.2 1.6e-86
XP_011544082 (OMIM: 608273) PREDICTED: interleukin ( 245) 1559 302.9 3.4e-82


>>NP_663634 (OMIM: 608273) interleukin-27 subunit alpha   (243 aa)
 initn: 1635 init1: 1635 opt: 1635  Z-score: 1674.2  bits: 317.2 E(85289): 1.6e-86
Smith-Waterman score: 1635; 99.6% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KE3 MGQTAGDLGWRLSLLLLPLLLVQAGVWGFPRPPGRPQLSLQELRREFTVSLHLARKLLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
NP_663 MGQTAGDLGWRLSLLLLPLLLVQAGVWGFPRPPGRPQLSLQELRREFTVSLHLARKLLSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VRGQAHRFAESHLPGVNLYLLPLGEQLPDVSLTFQAWRRLSDPERLCFISTTLQPFHALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 VRGQAHRFAESHLPGVNLYLLPLGEQLPDVSLTFQAWRRLSDPERLCFISTTLQPFHALL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGLGTQGRWTNMERMQLWAMRLDLRDLQRHLRFQVLAAGFNLPEEEEEEEEEEEEERKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 GGLGTQGRWTNMERMQLWAMRLDLRDLQRHLRFQVLAAGFNLPEEEEEEEEEEEEERKGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LPGALGSALQGPAQVSWPQLLSTYRLLHSLELVLSRAVRELLLLSKAGHSVWPLGFPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_663 LPGALGSALQGPAQVSWPQLLSTYRLLHSLELVLSRAVRELLLLSKAGHSVWPLGFPTLS
              190       200       210       220       230       240

          
pF1KE3 PQP
       :::
NP_663 PQP
          

>>XP_011544082 (OMIM: 608273) PREDICTED: interleukin-27   (245 aa)
 initn: 1559 init1: 1559 opt: 1559  Z-score: 1596.7  bits: 302.9 E(85289): 3.4e-82
Smith-Waterman score: 1559; 99.6% identity (100.0% similar) in 233 aa overlap (11-243:13-245)

                 10        20        30        40        50        
pF1KE3   MGQTAGDLGWRLSLLLLPLLLVQAGVWGFPRPPGRPQLSLQELRREFTVSLHLARKLL
                   ::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MGPYPQVLAGTNRLSLLLLPLLLVQAGVWGFPRPPGRPQLSLQELRREFTVSLHLARKLL
               10        20        30        40        50        60

       60        70        80        90       100       110        
pF1KE3 AEVRGQAHRFAESHLPGVNLYLLPLGEQLPDVSLTFQAWRRLSDPERLCFISTTLQPFHA
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SEVRGQAHRFAESHLPGVNLYLLPLGEQLPDVSLTFQAWRRLSDPERLCFISTTLQPFHA
               70        80        90       100       110       120

      120       130       140       150       160       170        
pF1KE3 LLGGLGTQGRWTNMERMQLWAMRLDLRDLQRHLRFQVLAAGFNLPEEEEEEEEEEEEERK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LLGGLGTQGRWTNMERMQLWAMRLDLRDLQRHLRFQVLAAGFNLPEEEEEEEEEEEEERK
              130       140       150       160       170       180

      180       190       200       210       220       230        
pF1KE3 GLLPGALGSALQGPAQVSWPQLLSTYRLLHSLELVLSRAVRELLLLSKAGHSVWPLGFPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLLPGALGSALQGPAQVSWPQLLSTYRLLHSLELVLSRAVRELLLLSKAGHSVWPLGFPT
              190       200       210       220       230       240

      240   
pF1KE3 LSPQP
       :::::
XP_011 LSPQP
            




243 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:52:54 2016 done: Sun Nov  6 04:52:56 2016
 Total Scan time:  8.230 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]