FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3081, 243 aa
  1>>>pF1KE3081 243 - 243 aa - 243 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0724+/-0.000596; mu= 11.8972+/- 0.036
 mean_var=97.4215+/-19.251, 0's: 0 Z-trim(115.3): 2  B-trim: 0 in 0/52
 Lambda= 0.129941
 statistics sampled from 15903 (15904) to 15903 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.817), E-opt: 0.2 (0.489), width:  16
 Scan time:  2.820

The best scores are:                                      opt bits E(32554)
CCDS10633.1 IL27 gene_id:246778|Hs108|chr16        ( 243) 1635 315.7 1.7e-86


>>CCDS10633.1 IL27 gene_id:246778|Hs108|chr16             (243 aa)
 initn: 1635 init1: 1635 opt: 1635  Z-score: 1666.2  bits: 315.7 E(32554): 1.7e-86
Smith-Waterman score: 1635; 99.6% identity (100.0% similar) in 243 aa overlap (1-243:1-243)

               10        20        30        40        50        60
pF1KE3 MGQTAGDLGWRLSLLLLPLLLVQAGVWGFPRPPGRPQLSLQELRREFTVSLHLARKLLAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:
CCDS10 MGQTAGDLGWRLSLLLLPLLLVQAGVWGFPRPPGRPQLSLQELRREFTVSLHLARKLLSE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 VRGQAHRFAESHLPGVNLYLLPLGEQLPDVSLTFQAWRRLSDPERLCFISTTLQPFHALL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VRGQAHRFAESHLPGVNLYLLPLGEQLPDVSLTFQAWRRLSDPERLCFISTTLQPFHALL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 GGLGTQGRWTNMERMQLWAMRLDLRDLQRHLRFQVLAAGFNLPEEEEEEEEEEEEERKGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GGLGTQGRWTNMERMQLWAMRLDLRDLQRHLRFQVLAAGFNLPEEEEEEEEEEEEERKGL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 LPGALGSALQGPAQVSWPQLLSTYRLLHSLELVLSRAVRELLLLSKAGHSVWPLGFPTLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LPGALGSALQGPAQVSWPQLLSTYRLLHSLELVLSRAVRELLLLSKAGHSVWPLGFPTLS
              190       200       210       220       230       240

          
pF1KE3 PQP
       :::
CCDS10 PQP
          




243 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 04:52:54 2016 done: Sun Nov  6 04:52:54 2016
 Total Scan time:  2.820 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]