FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5538, 365 aa 1>>>pF1KE5538 365 - 365 aa - 365 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7234+/-0.000412; mu= 14.0532+/- 0.026 mean_var=64.2271+/-12.969, 0's: 0 Z-trim(110.8): 139 B-trim: 183 in 1/52 Lambda= 0.160035 statistics sampled from 19066 (19215) to 19066 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.225), width: 16 Scan time: 5.800 The best scores are: opt bits E(85289) NP_004952 (OMIM: 300093) gamma-aminobutyric acid r ( 506) 2392 561.3 1.7e-159 XP_016884878 (OMIM: 300093) PREDICTED: gamma-amino ( 267) 1697 400.7 1.9e-111 XP_016884875 (OMIM: 300093) PREDICTED: gamma-amino ( 393) 1697 400.8 2.8e-111 XP_016884876 (OMIM: 300093) PREDICTED: gamma-amino ( 361) 1389 329.7 6.5e-90 NP_150092 (OMIM: 600233) gamma-aminobutyric acid r ( 467) 1234 293.9 4.9e-79 XP_011519732 (OMIM: 600233) PREDICTED: gamma-amino ( 473) 1234 293.9 4.9e-79 NP_000807 (OMIM: 137164,607681,611277) gamma-amino ( 467) 1226 292.1 1.8e-78 NP_944494 (OMIM: 137164,607681,611277) gamma-amino ( 475) 1226 292.1 1.8e-78 NP_775807 (OMIM: 137166) gamma-aminobutyric acid r ( 465) 1215 289.5 1e-77 NP_000802 (OMIM: 137143) gamma-aminobutyric acid r ( 453) 1029 246.6 8.4e-65 NP_001191195 (OMIM: 137141) gamma-aminobutyric aci ( 535) 1022 245.0 3e-64 NP_000800 (OMIM: 137141) gamma-aminobutyric acid r ( 554) 1022 245.0 3.1e-64 XP_016884877 (OMIM: 300093) PREDICTED: gamma-amino ( 313) 984 236.1 8e-62 NP_001121115 (OMIM: 137160,611136,615744) gamma-am ( 456) 982 235.7 1.6e-61 NP_001121116 (OMIM: 137160,611136,615744) gamma-am ( 456) 982 235.7 1.6e-61 NP_001121117 (OMIM: 137160,611136,615744) gamma-am ( 456) 982 235.7 1.6e-61 NP_001121120 (OMIM: 137160,611136,615744) gamma-am ( 456) 982 235.7 1.6e-61 NP_000797 (OMIM: 137160,611136,615744) gamma-amino ( 456) 982 235.7 1.6e-61 NP_000799 (OMIM: 305660) gamma-aminobutyric acid r ( 492) 982 235.7 1.7e-61 NP_000801 (OMIM: 137142) gamma-aminobutyric acid r ( 462) 979 235.0 2.6e-61 XP_005268315 (OMIM: 137142) PREDICTED: gamma-amino ( 462) 979 235.0 2.6e-61 XP_006720522 (OMIM: 137142) PREDICTED: gamma-amino ( 462) 979 235.0 2.6e-61 NP_001158509 (OMIM: 137142) gamma-aminobutyric aci ( 462) 979 235.0 2.6e-61 XP_016877548 (OMIM: 600233) PREDICTED: gamma-amino ( 355) 974 233.8 4.5e-61 XP_016877547 (OMIM: 600233) PREDICTED: gamma-amino ( 361) 974 233.8 4.5e-61 XP_016863472 (OMIM: 103780,137140) PREDICTED: gamm ( 451) 963 231.3 3.2e-60 NP_000798 (OMIM: 103780,137140) gamma-aminobutyric ( 451) 963 231.3 3.2e-60 NP_001107647 (OMIM: 103780,137140) gamma-aminobuty ( 451) 963 231.3 3.2e-60 XP_016863471 (OMIM: 103780,137140) PREDICTED: gamm ( 451) 963 231.3 3.2e-60 NP_001317619 (OMIM: 103780,137140) gamma-aminobuty ( 511) 963 231.3 3.6e-60 XP_011511977 (OMIM: 103780,137140) PREDICTED: gamm ( 511) 963 231.3 3.6e-60 XP_011529442 (OMIM: 300093) PREDICTED: gamma-amino ( 284) 942 226.4 6.1e-59 XP_016863479 (OMIM: 137166) PREDICTED: gamma-amino ( 336) 942 226.4 7.1e-59 XP_005248137 (OMIM: 103780,137140) PREDICTED: gamm ( 396) 824 199.2 1.3e-50 NP_001273756 (OMIM: 103780,137140) gamma-aminobuty ( 456) 824 199.2 1.5e-50 XP_011539496 (OMIM: 137163,613060) PREDICTED: gamm ( 465) 799 193.5 8.3e-49 NP_000803 (OMIM: 137190,617153) gamma-aminobutyric ( 474) 797 193.0 1.2e-48 NP_000806 (OMIM: 137163,613060) gamma-aminobutyric ( 452) 792 191.8 2.5e-48 XP_016856425 (OMIM: 137163,613060) PREDICTED: gamm ( 687) 791 191.7 4.3e-48 NP_001257802 (OMIM: 600233) gamma-aminobutyric aci ( 253) 785 190.2 4.5e-48 XP_016877545 (OMIM: 137142) PREDICTED: gamma-amino ( 306) 784 190.0 6.3e-48 XP_016877544 (OMIM: 137142) PREDICTED: gamma-amino ( 306) 784 190.0 6.3e-48 NP_000804 (OMIM: 600232) gamma-aminobutyric acid r ( 474) 785 190.2 8e-48 NP_068711 (OMIM: 600232) gamma-aminobutyric acid r ( 512) 785 190.2 8.5e-48 XP_006724874 (OMIM: 305660) PREDICTED: gamma-amino ( 340) 780 189.0 1.3e-47 NP_068712 (OMIM: 137192,612269,617113) gamma-amino ( 473) 780 189.1 1.8e-47 NP_001036008 (OMIM: 600421) glycine receptor subun ( 449) 771 187.0 7.1e-47 NP_006520 (OMIM: 600421) glycine receptor subunit ( 464) 771 187.0 7.3e-47 NP_000805 (OMIM: 137192,612269,617113) gamma-amino ( 473) 771 187.0 7.5e-47 NP_000162 (OMIM: 138491,149400) glycine receptor s ( 449) 767 186.1 1.4e-46 >>NP_004952 (OMIM: 300093) gamma-aminobutyric acid recep (506 aa) initn: 2392 init1: 2392 opt: 2392 Z-score: 2984.3 bits: 561.3 E(85289): 1.7e-159 Smith-Waterman score: 2392; 99.2% identity (100.0% similar) in 365 aa overlap (1-365:1-365) 10 20 30 40 50 60 pF1KE5 MLSKVLPVFLGILLILQSRVEGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MLSKVLPVLLGILLILQSRVEGPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 TGSRVGKLPEASRILNTILSNYDHKLRPGIGEKPTVVTVEIAVNSLGPLSILDMEYTIDI :::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::: NP_004 TGSRVGKLPEASRILNTILSNYDHKLRPGIGEKPTVVTVEISVNSLGPLSILDMEYTIDI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 IFSQTWYDERLCYNDTFESLVLNGNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IFSQTWYDERLCYNDTFESLVLNGNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 GKVLYTIRMTIDAGCSLHMLRFPMDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 GKVLYTIRMTIDAGCSLHMLRFPMDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSW 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 KLFQFDFTGVSNKTEIITTPVGDFMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KLFQFDFTGVSNKTEIITTPVGDFMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFW 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 IKTESAPARTSLGITSVLTMTTLGTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 IKTESAPARTSLGITSVLTMTTLGTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAV 310 320 330 340 350 360 pF1KE5 LNFLM ::::. NP_004 LNFLIYNQTKAHASPKLRHPRINSRAHARTRARSRACARQHQEAFVCQIVTTEGSDGEER 370 380 390 400 410 420 >>XP_016884878 (OMIM: 300093) PREDICTED: gamma-aminobuty (267 aa) initn: 1697 init1: 1697 opt: 1697 Z-score: 2121.7 bits: 400.7 E(85289): 1.9e-111 Smith-Waterman score: 1697; 99.6% identity (100.0% similar) in 252 aa overlap (114-365:1-252) 90 100 110 120 130 140 pF1KE5 HKLRPGIGEKPTVVTVEIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLVLN :::::::::::::::::::::::::::::: XP_016 MEYTIDIIFSQTWYDERLCYNDTFESLVLN 10 20 30 150 160 170 180 190 200 pF1KE5 GNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFP 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE5 MDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGD 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE5 FMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTL 160 170 180 190 200 210 330 340 350 360 pF1KE5 GTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLM :::::::::::::::::::::::::::::::::::::::::. XP_016 GTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLIYNQTKAHASPKLRHV 220 230 240 250 260 >>XP_016884875 (OMIM: 300093) PREDICTED: gamma-aminobuty (393 aa) initn: 1697 init1: 1697 opt: 1697 Z-score: 2118.9 bits: 400.8 E(85289): 2.8e-111 Smith-Waterman score: 1697; 99.6% identity (100.0% similar) in 252 aa overlap (114-365:1-252) 90 100 110 120 130 140 pF1KE5 HKLRPGIGEKPTVVTVEIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLVLN :::::::::::::::::::::::::::::: XP_016 MEYTIDIIFSQTWYDERLCYNDTFESLVLN 10 20 30 150 160 170 180 190 200 pF1KE5 GNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFP 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE5 MDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGD 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE5 FMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTL 160 170 180 190 200 210 330 340 350 360 pF1KE5 GTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLM :::::::::::::::::::::::::::::::::::::::::. XP_016 GTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLIYNQTKAHASPKLRHPRIN 220 230 240 250 260 270 XP_016 SRAHARTRARSRACARQHQEAFVCQIVTTEGSDGEERPSCSAQQPPSPGSPEGPRSLCSK 280 290 300 310 320 330 >>XP_016884876 (OMIM: 300093) PREDICTED: gamma-aminobuty (361 aa) initn: 1465 init1: 1384 opt: 1389 Z-score: 1735.2 bits: 329.7 E(85289): 6.5e-90 Smith-Waterman score: 1399; 86.9% identity (87.3% similar) in 252 aa overlap (114-365:1-220) 90 100 110 120 130 140 pF1KE5 HKLRPGIGEKPTVVTVEIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLVLN ::::::::::::: XP_016 MEYTIDIIFSQTW----------------- 10 150 160 170 180 190 200 pF1KE5 GNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFP ::::::::::::::::::::::::::::::::::::::::::::: XP_016 ---------------NSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFP 20 30 40 50 210 220 230 240 250 260 pF1KE5 MDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGD 60 70 80 90 100 110 270 280 290 300 310 320 pF1KE5 FMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 FMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTL 120 130 140 150 160 170 330 340 350 360 pF1KE5 GTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLM :::::::::::::::::::::::::::::::::::::::::. XP_016 GTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLIYNQTKAHASPKLRHPRIN 180 190 200 210 220 230 XP_016 SRAHARTRARSRACARQHQEAFVCQIVTTEGSDGEERPSCSAQQPPSPGSPEGPRSLCSK 240 250 260 270 280 290 >>NP_150092 (OMIM: 600233) gamma-aminobutyric acid recep (467 aa) initn: 1232 init1: 1232 opt: 1234 Z-score: 1540.0 bits: 293.9 E(85289): 4.9e-79 Smith-Waterman score: 1234; 54.8% identity (86.2% similar) in 312 aa overlap (52-363:28-339) 30 40 50 60 70 80 pF1KE5 GPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETETGSRVGKLPEASRILNTILSN :...:.. . . .. ... ::: .: . NP_150 MAPKLLLLLCLFSGLHARSRKVEEDEYEDSSSNQKWVLAPKSQDTDVTLILNKLLRE 10 20 30 40 50 90 100 110 120 130 140 pF1KE5 YDHKLRPGIGEKPTVVTVEIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLV ::.:::: :: ::::. :.: :::.::.: ..::: :::.:.::: : :: .:.:.. :. NP_150 YDKKLRPDIGIKPTVIDVDIYVNSIGPVSSINMEYQIDIFFAQTWTDSRLRFNSTMKILT 60 70 80 90 100 110 150 160 170 180 190 200 pF1KE5 LNGNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLR ::.:.:. .:::::.::::: .. : :: :::..::..:::.:::.:.::.: :.:.. NP_150 LNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHN 120 130 140 150 160 170 210 220 230 240 250 260 pF1KE5 FPMDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPV :::: ::::: :::..::..::::.:.. ..: ...::.:.:::: :. : :::.:: . NP_150 FPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVTTSA 180 190 200 210 220 230 270 280 290 300 310 320 pF1KE5 GDFMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMT ::..::::.:..:::.:: ..:.:.: .:..::::::::: ...::::.::::.::::: NP_150 GDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMT 240 250 260 270 280 290 330 340 350 360 pF1KE5 TLGTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLM ::.:..::..:::::.::.:.....::.: : ::.:.:.::. NP_150 TLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSSCRKPTTTKKTTSLLH 300 310 320 330 340 350 NP_150 PDSSRWIPERISLQAPSNYSLLDMRPPPTAMITLNNSVYWQEFEDTCVYECLDGKDCQSF 360 370 380 390 400 410 >>XP_011519732 (OMIM: 600233) PREDICTED: gamma-aminobuty (473 aa) initn: 1232 init1: 1232 opt: 1234 Z-score: 1539.9 bits: 293.9 E(85289): 4.9e-79 Smith-Waterman score: 1234; 54.8% identity (86.2% similar) in 312 aa overlap (52-363:28-339) 30 40 50 60 70 80 pF1KE5 GPQTESKNEASSRDVVYGPQPQPLENQLLSEETKSTETETGSRVGKLPEASRILNTILSN :...:.. . . .. ... ::: .: . XP_011 MAPKLLLLLCLFSGLHARSRKVEEDEYEDSSSNQKWVLAPKSQDTDVTLILNKLLRE 10 20 30 40 50 90 100 110 120 130 140 pF1KE5 YDHKLRPGIGEKPTVVTVEIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLV ::.:::: :: ::::. :.: :::.::.: ..::: :::.:.::: : :: .:.:.. :. XP_011 YDKKLRPDIGIKPTVIDVDIYVNSIGPVSSINMEYQIDIFFAQTWTDSRLRFNSTMKILT 60 70 80 90 100 110 150 160 170 180 190 200 pF1KE5 LNGNVVSQLWIPDTFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLR ::.:.:. .:::::.::::: .. : :: :::..::..:::.:::.:.::.: :.:.. XP_011 LNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAECQLQLHN 120 130 140 150 160 170 210 220 230 240 250 260 pF1KE5 FPMDSHSCPLSFSSFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPV :::: ::::: :::..::..::::.:.. ..: ...::.:.:::: :. : :::.:: . XP_011 FPMDEHSCPLIFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVTTSA 180 190 200 210 220 230 270 280 290 300 310 320 pF1KE5 GDFMVMTIFFNVSRRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMT ::..::::.:..:::.:: ..:.:.: .:..::::::::: ...::::.::::.::::: XP_011 GDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTALGITTVLTMT 240 250 260 270 280 290 330 340 350 360 pF1KE5 TLGTFSRKNFPRVSYITALDFYIAICFVFCFCALLEFAVLNFLM ::.:..::..:::::.::.:.....::.: : ::.:.:.::. XP_011 TLSTIARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSSCRKPTTTKKTTSLLH 300 310 320 330 340 350 XP_011 PDSSRWIPERISLQAPSVRIALQNYSLLDMRPPPTAMITLNNSVYWQEFEDTCVYECLDG 360 370 380 390 400 410 >>NP_000807 (OMIM: 137164,607681,611277) gamma-aminobuty (467 aa) initn: 1218 init1: 1218 opt: 1226 Z-score: 1530.0 bits: 292.1 E(85289): 1.8e-78 Smith-Waterman score: 1226; 53.5% identity (88.0% similar) in 301 aa overlap (67-365:60-360) 40 50 60 70 80 90 pF1KE5 VYGPQPQPLENQLLSEETKSTETETGSRVGKLPEA--SRILNTILSNYDHKLRPGIGEKP :.::. . :::..: .::.:::: :: :: NP_000 LLSLYPGFTSQKSDDDYEDYASNKTWVLTPKVPEGDVTVILNNLLEGYDNKLRPDIGVKP 30 40 50 60 70 80 100 110 120 130 140 150 pF1KE5 TVVTVEIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLVLNGNVVSQLWIPD :.. ... :::.::.. ..:::::::.:.:::::.:: .:.:.. : ::.:.:...:::: NP_000 TLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNSTIKVLRLNSNMVGKIWIPD 90 100 110 120 130 140 160 170 180 190 200 210 pF1KE5 TFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFPMDSHSCPLSFS :::::::.. : :: ::.:.::..::.::::.:.:::: :.:.. :::: ::::: :: NP_000 TFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSCPLEFS 150 160 170 180 190 200 220 230 240 250 260 270 pF1KE5 SFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGDFMVMTIFFNVS :..::..:..:.:. ..:... ::.:.::.:.:. : ::.. : ::..::...:..: NP_000 SYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLS 210 220 230 240 250 260 280 290 300 310 320 330 pF1KE5 RRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTLGTFSRKNFPRV ::.:: ..:.:.: .. ..::::::::. ...:::::::::.:::::::.:..::..:.: NP_000 RRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKV 270 280 290 300 310 320 340 350 360 pF1KE5 SYITALDFYIAICFVFCFCALLEFAVLNFLM ::.::.:.....::.: : ::.:...:.... NP_000 SYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDKDKKKKNPAPTIDIRPRSATI 330 340 350 360 370 380 NP_000 QMNNATHLQERDEEYGYECLDGKDCASFFCCFEDCRTGAWRHGRIHIRIAKMDSYARIFF 390 400 410 420 430 440 >>NP_944494 (OMIM: 137164,607681,611277) gamma-aminobuty (475 aa) initn: 1218 init1: 1218 opt: 1226 Z-score: 1529.9 bits: 292.1 E(85289): 1.8e-78 Smith-Waterman score: 1226; 53.5% identity (88.0% similar) in 301 aa overlap (67-365:60-360) 40 50 60 70 80 90 pF1KE5 VYGPQPQPLENQLLSEETKSTETETGSRVGKLPEA--SRILNTILSNYDHKLRPGIGEKP :.::. . :::..: .::.:::: :: :: NP_944 LLSLYPGFTSQKSDDDYEDYASNKTWVLTPKVPEGDVTVILNNLLEGYDNKLRPDIGVKP 30 40 50 60 70 80 100 110 120 130 140 150 pF1KE5 TVVTVEIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLVLNGNVVSQLWIPD :.. ... :::.::.. ..:::::::.:.:::::.:: .:.:.. : ::.:.:...:::: NP_944 TLIHTDMYVNSIGPVNAINMEYTIDIFFAQTWYDRRLKFNSTIKVLRLNSNMVGKIWIPD 90 100 110 120 130 140 160 170 180 190 200 210 pF1KE5 TFFRNSKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFPMDSHSCPLSFS :::::::.. : :: ::.:.::..::.::::.:.:::: :.:.. :::: ::::: :: NP_944 TFFRNSKKADAHWITTPNRMLRIWNDGRVLYTLRLTIDAECQLQLHNFPMDEHSCPLEFS 150 160 170 180 190 200 220 230 240 250 260 270 pF1KE5 SFSYPENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGDFMVMTIFFNVS :..::..:..:.:. ..:... ::.:.::.:.:. : ::.. : ::..::...:..: NP_944 SYGYPREEIVYQWKRSSVEVGDTRSWRLYQFSFVGLRNTTEVVKTTSGDYVVMSVYFDLS 210 220 230 240 250 260 280 290 300 310 320 330 pF1KE5 RRFGYVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTLGTFSRKNFPRV ::.:: ..:.:.: .. ..::::::::. ...:::::::::.:::::::.:..::..:.: NP_944 RRMGYFTIQTYIPCTLIVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKV 270 280 290 300 310 320 340 350 360 pF1KE5 SYITALDFYIAICFVFCFCALLEFAVLNFLM ::.::.:.....::.: : ::.:...:.... NP_944 SYVTAMDLFVSVCFIFVFSALVEYGTLHYFVSNRKPSKDKDKKKKNPLLRMFSFKAPTID 330 340 350 360 370 380 NP_944 IRPRSATIQMNNATHLQERDEEYGYECLDGKDCASFFCCFEDCRTGAWRHGRIHIRIAKM 390 400 410 420 430 440 >>NP_775807 (OMIM: 137166) gamma-aminobutyric acid recep (465 aa) initn: 1234 init1: 1211 opt: 1215 Z-score: 1516.3 bits: 289.5 E(85289): 1e-77 Smith-Waterman score: 1215; 54.2% identity (87.8% similar) in 295 aa overlap (70-364:63-357) 40 50 60 70 80 90 pF1KE5 PQPQPLENQLLSEETKSTETETGSRVGKLPEASRILNTILSNYDHKLRPGIGEKPTVVTV . ..:::..:..::.:::: :: .:::. . NP_775 GNCVDKADDEDDEDLTVNKTWVLAPKIHEGDITQILNSLLQGYDNKLRPDIGVRPTVIET 40 50 60 70 80 90 100 110 120 130 140 150 pF1KE5 EIAVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLVLNGNVVSQLWIPDTFFRN .. :::.::.. ..:::::::::.:::.: :: .:.:.. :.::.:.:...::::::::: NP_775 DVYVNSIGPVDPINMEYTIDIIFAQTWFDSRLKFNSTMKVLMLNSNMVGKIWIPDTFFRN 100 110 120 130 140 150 160 170 180 190 200 210 pF1KE5 SKRTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFPMDSHSCPLSFSSFSYP :... : :: ::...::..::.::::.:.::.: : :.. :::: ::::: :::..:: NP_775 SRKSDAHWITTPNRLLRIWNDGRVLYTLRLTINAECYLQLHNFPMDEHSCPLEFSSYGYP 160 170 180 190 200 210 220 230 240 250 260 270 pF1KE5 ENEMIYKWENFKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGDFMVMTIFFNVSRRFGY .::. :::.. ..:. . . :.:.:: :.:. :.::: : ::...:::::..:::.:: NP_775 KNEIEYKWKKPSVEVADPKYWRLYQFAFVGLRNSTEITHTISGDYVIMTIFFDLSRRMGY 220 230 240 250 260 270 280 290 300 310 320 330 pF1KE5 VAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTLGTFSRKNFPRVSYITA ..:.:.: .:..::::::::. ...:::::::::.:::::::.:..::..:.:::.:: NP_775 FTIQTYIPCILTVVLSWVSFWINKDAVPARTSLGITTVLTMTTLSTIARKSLPKVSYVTA 280 290 300 310 320 330 340 350 360 pF1KE5 LDFYIAICFVFCFCALLEFAVLNFLM .:.....::.: : ::.:...:... NP_775 MDLFVSVCFIFVFAALMEYGTLHYFTSNQKGKTATKDRKLKNKASMTPGLHPGSTLIPMN 340 350 360 370 380 390 >>NP_000802 (OMIM: 137143) gamma-aminobutyric acid recep (453 aa) initn: 958 init1: 597 opt: 1029 Z-score: 1284.4 bits: 246.6 E(85289): 8.4e-65 Smith-Waterman score: 1029; 48.0% identity (82.8% similar) in 296 aa overlap (72-364:33-327) 50 60 70 80 90 100 pF1KE5 PQPLENQLLSEETKSTETETGSRVGKLPEASRILNTILSNYDHKLRPGIGEKPTVVTVEI ::::...: .::..::::.: : : ..: NP_000 SSLPWLCIILWLENALGKLEVEGNFYSENVSRILDNLLEGYDNRLRPGFGGAVTEVKTDI 10 20 30 40 50 60 110 120 130 140 150 160 pF1KE5 AVNSLGPLSILDMEYTIDIIFSQTWYDERLCYNDTFESLVLNGNVVSQLWIPDTFFRNSK :.:.::.: ..::::.:..: ::: :::: .. : : ::. .::..: :::::::.: NP_000 YVTSFGPVSDVEMEYTMDVFFRQTWTDERLKFGGPTEILSLNNLMVSKIWTPDTFFRNGK 70 80 90 100 110 120 170 180 190 200 210 220 pF1KE5 RTHEHEITMPNQMVRIYKDGKVLYTIRMTIDAGCSLHMLRFPMDSHSCPLSFSSFSYPEN .. :..: ::.. ::...: .:::.:.::.: : .... ::::.:.:::.:.:..::.. NP_000 KSIAHNMTTPNKLFRIMQNGTILYTMRLTINADCPMRLVNFPMDGHACPLKFGSYAYPKS 130 140 150 160 170 180 230 240 250 260 270 pF1KE5 EMIYKWEN---FKLEINEKNSWKLFQFDFTGVSNKTEIITTPVGDFMVMTIFFNVSRRFG :.:: :.. ...:. :..: .:.:.:. : . ..: : . .:....::..:...:..: NP_000 EIIYTWKKGPLYSVEVPEESS-SLLQYDLIGQTVSSETIKSNTGEYVIMTVYFHLQRKMG 190 200 210 220 230 240 280 290 300 310 320 330 pF1KE5 YVAFQNYVPSSVTTMLSWVSFWIKTESAPARTSLGITSVLTMTTLGTFSRKNFPRVSYIT : .: :.: .:..:: :::::. ::.:::: .:::.:::::::. .:...:.::: : NP_000 YFMIQIYTPCIMTVILSQVSFWINKESVPARTVFGITTVLTMTTLSISARHSLPKVSYAT 250 260 270 280 290 300 340 350 360 pF1KE5 ALDFYIAICFVFCFCALLEFAVLNFLM :.:..::.::.: : ::.:::..:.. NP_000 AMDWFIAVCFAFVFSALIEFAAVNYFTNLQTQKAKRKAQFAAPPTVTISKATEPLEAEIV 310 320 330 340 350 360 365 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 01:37:00 2016 done: Tue Nov 8 01:37:01 2016 Total Scan time: 5.800 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]