FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE3556, 244 aa
  1>>>pF1KE3556 244 - 244 aa - 244 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4243+/-0.000756; mu= 13.6083+/- 0.046
 mean_var=63.2767+/-12.256, 0's: 0 Z-trim(108.3): 13  B-trim: 0 in 0/50
 Lambda= 0.161232
 statistics sampled from 10096 (10103) to 10096 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.31), width:  16
 Scan time:  2.080

The best scores are:                                      opt bits E(32554)
CCDS73430.1 EMG1 gene_id:10436|Hs108|chr12         ( 244) 1617 384.4 3.7e-107


>>CCDS73430.1 EMG1 gene_id:10436|Hs108|chr12              (244 aa)
 initn: 1617 init1: 1617 opt: 1617  Z-score: 2037.3  bits: 384.4 E(32554): 3.7e-107
Smith-Waterman score: 1617; 100.0% identity (100.0% similar) in 244 aa overlap (1-244:1-244)

               10        20        30        40        50        60
pF1KE3 MAAPSDGFKPRERSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MAAPSDGFKPRERSGGEQAQDWDALPPKRPRLGAGNKIGGRRLIVVLEGASLETVKVGKT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE3 YELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YELLNCDKHKSILLKNGRDPGEARPDITHQSLLMLMDSPLNRAGLLQVYIHTQKNVLIEV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE3 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 NPQTRIPRTFDRFCGLMVQLLHKLSVRAADGPQKLLKVIKNPVSDHFPVGCMKVGTSFSI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE3 PVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PVVSDVRELVPSSDPIVFVVGAFAHGKVSVEYTEKMVSISNYPLSAALTCAKLTTAFEEV
              190       200       210       220       230       240

           
pF1KE3 WGVI
       ::::
CCDS73 WGVI
           




244 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:41:49 2016 done: Mon Nov  7 14:41:49 2016
 Total Scan time:  2.080 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]