FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3138, 350 aa 1>>>pF1KE3138 350 - 350 aa - 350 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6749+/-0.00094; mu= 14.8186+/- 0.056 mean_var=75.0934+/-14.893, 0's: 0 Z-trim(105.6): 18 B-trim: 41 in 1/50 Lambda= 0.148004 statistics sampled from 8515 (8519) to 8515 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.262), width: 16 Scan time: 2.560 The best scores are: opt bits E(32554) CCDS14270.1 RP2 gene_id:6102|Hs108|chrX ( 350) 2393 520.4 9e-148 CCDS4872.1 TBCC gene_id:6903|Hs108|chr6 ( 346) 352 84.6 1.4e-16 >>CCDS14270.1 RP2 gene_id:6102|Hs108|chrX (350 aa) initn: 2393 init1: 2393 opt: 2393 Z-score: 2766.5 bits: 520.4 E(32554): 9e-148 Smith-Waterman score: 2393; 100.0% identity (100.0% similar) in 350 aa overlap (1-350:1-350) 10 20 30 40 50 60 pF1KE3 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MGCFFSKRRKADKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 QFLIQDCENCNIYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 DCRKLEVFLCCATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 SGELNWSLLPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 FAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKAPDFLPLLNKGPVIAL 250 260 270 280 290 300 310 320 330 340 350 pF1KE3 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 EFNGDGAVEVCQLIVNEIFNGTKMFVSESKETASGDVDSFYNFADIQMGI 310 320 330 340 350 >>CCDS4872.1 TBCC gene_id:6903|Hs108|chr6 (346 aa) initn: 354 init1: 316 opt: 352 Z-score: 411.3 bits: 84.6 E(32554): 1.4e-16 Smith-Waterman score: 352; 29.9% identity (70.8% similar) in 154 aa overlap (42-192:186-339) 20 30 40 50 60 70 pF1KE3 DKESRPENEEERPKQYSWDQREKVDPKDYMFSGLKDETVGRLPGTVAGQQFLIQDCENCN ::.:..... . . . .. :. . ::. CCDS48 PGIPPAVESIQDSPLPKKAEGDLGPSWVCGFSNLESQVLEKRASELHQRDVLLTELSNCT 160 170 180 190 200 210 80 90 100 110 120 130 pF1KE3 IYIFDHSATVTIDDCTNCIIFLGPVKGSVFFRNCRDCKCTLACQQFRVRDCRKLEVFLCC . .. . :. . .: .. :::. :::...: :: ..::::.:... . ..:: CCDS48 VRLYGNPNTLRLTKAHSCKLLCGPVSTSVFLEDCSDCVLAVACQQLRIHSTKDTRIFLQV 220 230 240 250 260 270 140 150 160 170 180 pF1KE3 ATQPIIESSSNIKFGCFQWYYPELAFQFKDAGLSIFNNTWSNIHDFTPVSGEL---NWSL ... :.:. :.:.:. . : :::. .:...::. .:.:... ::. .. .. :::. CCDS48 TSRAIVEDCSGIQFAPYTWSYPEIDKDFESSGLDRSKNNWNDVDDFNWLARDMASPNWSI 280 290 300 310 320 330 190 200 210 220 230 240 pF1KE3 LPEDAVVQDYVPIPTTEELKAVRVSTEANRSIVPISRGQRQKSSDESCLVVLFAGDYTIA :::. CCDS48 LPEEERNIQWD 340 350 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:37:47 2016 done: Sun Nov 6 19:37:47 2016 Total Scan time: 2.560 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]