FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5313, 294 aa 1>>>pF1KE5313 294 - 294 aa - 294 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3089+/-0.000778; mu= 15.5637+/- 0.047 mean_var=65.9600+/-13.020, 0's: 0 Z-trim(107.7): 12 B-trim: 8 in 1/51 Lambda= 0.157919 statistics sampled from 9746 (9751) to 9746 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.681), E-opt: 0.2 (0.3), width: 16 Scan time: 2.050 The best scores are: opt bits E(32554) CCDS7870.1 MPPED2 gene_id:744|Hs108|chr11 ( 294) 2070 480.2 8.1e-136 CCDS44560.1 MPPED2 gene_id:744|Hs108|chr11 ( 277) 1797 417.9 4.1e-117 CCDS46723.1 MPPED1 gene_id:758|Hs108|chr22 ( 326) 1727 402.0 2.9e-112 >>CCDS7870.1 MPPED2 gene_id:744|Hs108|chr11 (294 aa) initn: 2070 init1: 2070 opt: 2070 Z-score: 2551.9 bits: 480.2 E(32554): 8.1e-136 Smith-Waterman score: 2070; 100.0% identity (100.0% similar) in 294 aa overlap (1-294:1-294) 10 20 30 40 50 60 pF1KE5 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 RRVRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQGS :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS78 RRVRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQGS 250 260 270 280 290 >>CCDS44560.1 MPPED2 gene_id:744|Hs108|chr11 (277 aa) initn: 1797 init1: 1797 opt: 1797 Z-score: 2216.1 bits: 417.9 E(32554): 4.1e-117 Smith-Waterman score: 1797; 100.0% identity (100.0% similar) in 255 aa overlap (1-255:1-255) 10 20 30 40 50 60 pF1KE5 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MAHGIPSQGKVTITVDEYSSNPTQAFTHYNINQSRFQPPHVHMVDPIPYDTPKPAGHTRF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 VCISDTHSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPYEYKIVIAGNHEL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 TFDKEFMADLVKQDYYRFPSVSKLKPEDFDNVQSLLTNSIYLQDSEVTVKGFRIYGAPWT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 PWFNGWGFNLPRGQSLLDKWNLIPEGIDILMTHGPPLGFRDWVPKELQRVGCVELLNTVQ 190 200 210 220 230 240 250 260 270 280 290 pF1KE5 RRVRPKLHVFGGIHEGYGIMTDGYTTYINASTCTVSFQPTNPPIIFDLPNPQGS ::::::::::::::: CCDS44 RRVRPKLHVFGGIHEVNPVSISKALRTKICSLPSKTS 250 260 270 >>CCDS46723.1 MPPED1 gene_id:758|Hs108|chr22 (326 aa) initn: 1748 init1: 1727 opt: 1727 Z-score: 2128.8 bits: 402.0 E(32554): 2.9e-112 Smith-Waterman score: 1727; 79.3% identity (94.6% similar) in 294 aa overlap (1-294:33-326) 10 20 30 pF1KE5 MAHGIPSQGKVTITVDEYSSNPTQAFTHYN :: ..... : ::::::::::::: :: CCDS46 RSRWDASVLKAEALALLPCGLGMAFSQSHVMAARRHQHSRLIIEVDEYSSNPTQAFTFYN 10 20 30 40 50 60 40 50 60 70 80 90 pF1KE5 INQSRFQPPHVHMVDPIPYDTPKPAGHTRFVCISDTHSRTDGIQMPYGDILLHTGDFTEL :::.:::::::.::::.:.:.::: :.:::::.:::::::: :::::::.:.:.:::::: CCDS46 INQGRFQPPHVQMVDPVPHDAPKPPGYTRFVCVSDTHSRTDPIQMPYGDVLIHAGDFTEL 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE5 GLPSEVKKFNDWLGNLPYEYKIVIAGNHELTFDKEFMADLVKQDYYRFPSVSKLKPEDFD ::::::::::.:::.::::::::::::::::::.::::::.:::.: ::::::::::... CCDS46 GLPSEVKKFNEWLGSLPYEYKIVIAGNHELTFDQEFMADLIKQDFYYFPSVSKLKPENYE 130 140 150 160 170 180 160 170 180 190 200 210 pF1KE5 NVQSLLTNSIYLQDSEVTVKGFRIYGAPWTPWFNGWGFNLPRGQSLLDKWNLIPEGIDIL :::::::: ::::::::::.::::::.:: ::: ::::::::::.::.::::::::.::: CCDS46 NVQSLLTNCIYLQDSEVTVRGFRIYGSPWQPWFYGWGFNLPRGQALLEKWNLIPEGVDIL 190 200 210 220 230 240 220 230 240 250 260 270 pF1KE5 MTHGPPLGFRDWVPKELQRVGCVELLNTVQRRVRPKLHVFGGIHEGYGIMTDGYTTYINA .:::::::: :::::..::::::::::::::::.:.::::: ::::::.:.:: :::.:: CCDS46 ITHGPPLGFLDWVPKKMQRVGCVELLNTVQRRVQPRLHVFGHIHEGYGVMADGTTTYVNA 250 260 270 280 290 300 280 290 pF1KE5 STCTVSFQPTNPPIIFDLPNPQGS :.:::..::.::::..:::.:..: CCDS46 SVCTVNYQPVNPPIVIDLPTPRNS 310 320 294 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 23:43:41 2016 done: Mon Nov 7 23:43:42 2016 Total Scan time: 2.050 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]