Result of FASTA (ccds) for
pFN21AE5312
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5312, 291 aa
1>>>pF1KE5312 291 - 291 aa - 291 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7189+/-0.00073; mu= 10.8776+/- 0.045
mean_var=125.8670+/-25.428, 0's: 0 Z-trim(113.3): 51 B-trim: 0 in 0/52
Lambda= 0.114319
statistics sampled from 13922 (13970) to 13922 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.429), width: 16
Scan time: 2.630
The best scores are: opt bits E(32554)
CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 ( 291) 1904 324.4 6.3e-89
CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 ( 304) 1904 324.4 6.5e-89
CCDS75761.1 RALYL gene_id:138046|Hs108|chr8 ( 218) 1355 233.7 9.1e-62
CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 ( 280) 1130 196.7 1.6e-50
CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14 ( 306) 907 159.9 2.1e-39
CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 ( 293) 664 119.9 2.3e-27
CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 ( 293) 613 111.4 7.9e-25
CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 ( 293) 608 110.6 1.4e-24
CCDS13230.1 RALY gene_id:22913|Hs108|chr20 ( 306) 590 107.7 1.1e-23
CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 ( 293) 588 107.3 1.4e-23
CCDS72705.1 HNRNPCL3 gene_id:649330|Hs108|chr1 ( 293) 588 107.3 1.4e-23
CCDS13229.1 RALY gene_id:22913|Hs108|chr20 ( 290) 577 105.5 4.8e-23
>>CCDS55253.1 RALYL gene_id:138046|Hs108|chr8 (291 aa)
initn: 1904 init1: 1904 opt: 1904 Z-score: 1710.0 bits: 324.4 E(32554): 6.3e-89
Smith-Waterman score: 1904; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
190 200 210 220 230 240
250 260 270 280 290
pF1KE5 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
250 260 270 280 290
>>CCDS55252.1 RALYL gene_id:138046|Hs108|chr8 (304 aa)
initn: 1904 init1: 1904 opt: 1904 Z-score: 1709.8 bits: 324.4 E(32554): 6.5e-89
Smith-Waterman score: 1904; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:14-304)
10 20 30 40
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MSKRRRLKQGEPIMTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE5 IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IVGCSVHKGYAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLS
70 80 90 100 110 120
110 120 130 140 150 160
pF1KE5 ALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ALYRLESKEPFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTR
130 140 150 160 170 180
170 180 190 200 210 220
pF1KE5 RGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 RGKGVFSMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAE
190 200 210 220 230 240
230 240 250 260 270 280
pF1KE5 AEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AEAQKKQLEESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELF
250 260 270 280 290 300
290
pF1KE5 LQIK
::::
CCDS55 LQIK
>>CCDS75761.1 RALYL gene_id:138046|Hs108|chr8 (218 aa)
initn: 1355 init1: 1355 opt: 1355 Z-score: 1222.4 bits: 233.7 E(32554): 9.1e-62
Smith-Waterman score: 1355; 100.0% identity (100.0% similar) in 205 aa overlap (87-291:14-218)
60 70 80 90 100 110
pF1KE5 YAFVQYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKE
::::::::::::::::::::::::::::::
CCDS75 MTMYKSKRRHQRYINMAGEPKPYRPKPGNKRPLSALYRLESKE
10 20 30 40
120 130 140 150 160 170
pF1KE5 PFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMK
50 60 70 80 90 100
180 190 200 210 220 230
pF1KE5 GGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLE
110 120 130 140 150 160
240 250 260 270 280 290
pF1KE5 ESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
170 180 190 200 210
>>CCDS75760.1 RALYL gene_id:138046|Hs108|chr8 (280 aa)
initn: 1814 init1: 1108 opt: 1130 Z-score: 1020.4 bits: 196.7 E(32554): 1.6e-50
Smith-Waterman score: 1796; 95.9% identity (96.2% similar) in 291 aa overlap (1-291:1-280)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALY----------
70 80 90 100 110
130 140 150 160 170 180
pF1KE5 VGGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 -SGYVFDYDYYRDDFYNRLFDYHGRVPPPPRAVIPLKRPRVAVTTTRRGKGVFSMKGGSR
120 130 140 150 160
190 200 210 220 230 240
pF1KE5 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 STASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLEESLV
170 180 190 200 210 220
250 260 270 280 290
pF1KE5 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
230 240 250 260 270 280
>>CCDS41915.1 HNRNPC gene_id:3183|Hs108|chr14 (306 aa)
initn: 727 init1: 504 opt: 907 Z-score: 821.1 bits: 159.9 E(32554): 2.1e-39
Smith-Waterman score: 907; 53.9% identity (75.4% similar) in 293 aa overlap (8-291:3-284)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
::::::.::.:.::::::::::: .::: :.::::::::::::::::::.:::
CCDS41 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALY----RLESKE
::..::.::::::::..:.:::: ::::.:.::: : : : :: . .: . :
CCDS41 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMYGSVTEHPSPS
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE5 PFLSVGGYVFDYDYYRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVF
:.:: ... .:::. :: .:.:...: .:::::: :::.: :: ::. .:.::::. :
CCDS41 PLLS-SSFDLDYDFQRD-YYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGF
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE5 SMKGGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKK
. :.:.:.. : ..:::.:.::.::::::::: :.:::: ::::::.:. .: .:.
CCDS41 NSKSGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKN
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE5 QLEESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
. : .:. : . : . .::: : :. : : ...: .:: : . . ::
CCDS41 DKSE-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIK
240 250 260 270 280
CCDS41 DDEKEAEEGEDDRDSANGEDDS
290 300
>>CCDS45079.1 HNRNPC gene_id:3183|Hs108|chr14 (293 aa)
initn: 723 init1: 500 opt: 664 Z-score: 604.7 bits: 119.9 E(32554): 2.3e-27
Smith-Waterman score: 886; 53.4% identity (73.4% similar) in 290 aa overlap (8-291:3-271)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
::::::.::.:.::::::::::: .::: :.::::::::::::::::::.:::
CCDS45 MASNVTNKTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
::..::.::::::::..:.:::: ::::.:.::: : : : :: . .:
CCDS45 QYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNRGKAGVKRSAAEMY----------
60 70 80 90 100
130 140 150 160 170
pF1KE5 VGGYVFDYDY-YRDDFYNRLFDYHGRVPPPP---RAVIPLKRPRVAVTTTRRGKGVFSMK
: :: :: .. :.:.:...: .:::::: :::.: :: ::. .:.::::. :. :
CCDS45 --GSSFDLDYDFQRDYYDRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 GGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLE
.:.:.. : ..:::.:.::.::::::::: :.:::: ::::::.:. .: .:..
CCDS45 SGQRGS---SKSGKLKGDDLQAIKKELTQIKQKVDSLLENLEKIEKEQSKQAVEMKNDKS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE5 ESLVLIQEECVSEIADHST--EEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
: .:. : . : . .::: : :. : : ...: .:: : . . ::
CCDS45 E-----EEQSSSSVKKDETNVKMESEGGAD-DSAEEGDLLDDDDNEDRGDDQLELIKDDE
230 240 250 260 270
CCDS45 KEAEEGEDDRDSANGEDDS
280 290
>>CCDS30591.1 HNRNPCL1 gene_id:343069|Hs108|chr1 (293 aa)
initn: 668 init1: 462 opt: 613 Z-score: 559.3 bits: 111.4 E(32554): 7.9e-25
Smith-Waterman score: 819; 50.0% identity (73.1% similar) in 290 aa overlap (8-291:3-271)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
:::::: ::.:.::::::::::: .::: :.::::::::::.:::::::.:::
CCDS30 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
:: .:..::::::::..:.::.: .:::.:.::: : . : :: . .:
CCDS30 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY----------
60 70 80 90 100
130 140 150 160 170
pF1KE5 VGGYVFDYDY-YRDDFYNRLFDYHGRVPPPPR---AVIPLKRPRVAVTTTRRGKGVFSMK
: :: :: .. :.:. .... .:::::: ::.: :: :.. .:.::::. :. :
CCDS30 --GSSFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRLSGNTSRRGKSGFNSK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 GGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQL
.:.:.. : ..:::.:.::.::.:::::: :.:::: ::::::.: : :.:... .
CCDS30 SGKRGS---SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE5 EESLVLIQEECVSEIADHS-TEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
:: .. : :.. .. .::: . :. : : ...: .:: : . . ::
CCDS30 EE-----EQSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDVNEDQGDDQLELIKDDE
230 240 250 260 270
CCDS30 KEAEEGEDDRDSTNGQDDS
280 290
>>CCDS76105.1 HNRNPCL2 gene_id:440563|Hs108|chr1 (293 aa)
initn: 650 init1: 449 opt: 608 Z-score: 554.8 bits: 110.6 E(32554): 1.4e-24
Smith-Waterman score: 803; 49.7% identity (72.4% similar) in 290 aa overlap (8-291:3-271)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
:::::: ::.:.::::::::::: .::: :.::::::::::.:::::::.:::
CCDS76 MASNVTNKMDPHSVNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
:: .:..::::::::..:.::.: ::.:.::: : . : :: . .:
CCDS76 QYDKEKNARAAVAGEDGRMIASQVAVINLAAEPKVNRGNAGVKRSAAEMY----------
60 70 80 90 100
130 140 150 160 170
pF1KE5 VGGYVFDYDY-YRDDFYNRLFDYHGRVPPPPR---AVIPLKRPRVAVTTTRRGKGVFSMK
: :: :: .. :.:. .... .:::::: ::.: :: :.. .:.::::. :. :
CCDS76 --GSSFDLDYGFQRDYYDGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 GGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQL
.:.:.. : ..:::.:.::.::.:::::: :.:::: ::::::.: : :.:... .
CCDS76 SGKRGS---SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEQSKQEVEVKNAKS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE5 EESLVLIQEECVSEIADHS-TEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
:: .. : :.. .. .::: . :. : : ...: .:: : . . ::
CCDS76 EE-----EQSSSSMKKDETHVKMESEGGAE-DSAEEGDPLDDDDNEDQGDNQLHLIKNNE
230 240 250 260 270
CCDS76 KDAEEGEDNRDSTNGQDDS
280 290
>>CCDS13230.1 RALY gene_id:22913|Hs108|chr20 (306 aa)
initn: 884 init1: 543 opt: 590 Z-score: 538.5 bits: 107.7 E(32554): 1.1e-23
Smith-Waterman score: 940; 66.2% identity (81.9% similar) in 237 aa overlap (1-233:1-224)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
:. : :.::::::::::::::::::::::::.::: :.:.::::::...:::::::::::
CCDS13 MSLKLQASNVTNKNDPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVHKGYAFV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
:: .:::::::: :::.::.::: ::::::::::: ::: : :: ::.:
CCDS13 QYSNERHARAAVLGENGRVLAGQTLDINMAGEPKPDRPK-GLKRAASAIY----------
70 80 90 100
130 140 150 160 170
pF1KE5 VGGYVFDYDYYRDDFYNRLFDYHGRVPP-P-PRAVIPLKRPRVAVTTTRRGKGVFSMKGG
.::.:::::::::::.:::::.::. : : :::: :.:::::.: .:: : .:
CCDS13 -SGYIFDYDYYRDDFYDRLFDYRGRLSPVPVPRAV-PVKRPRVTVPLVRRVKTNVPVKLF
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 SRSTA--SGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQKAEAEAQKKQLE
.:::: ..:. ::::.:::.:: ::::::..::.::.:::.: .:::. ...::
CCDS13 ARSTAVTTSSAKIKLKSSELQAIKTELTQIKSNIDALLSRLEQIAAEQKANPDGKKKGDG
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE5 ESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
CCDS13 GGAGGGGGGGGSGGGGSGGGGGGGSSRPPAPQENTTSEAGLPQGEARTRDDGDEEGLLTH
230 240 250 260 270 280
>>CCDS76107.1 HNRNPCL4 gene_id:101060301|Hs108|chr1 (293 aa)
initn: 651 init1: 462 opt: 588 Z-score: 537.0 bits: 107.3 E(32554): 1.4e-23
Smith-Waterman score: 794; 49.8% identity (71.3% similar) in 289 aa overlap (8-291:3-271)
10 20 30 40 50 60
pF1KE5 MTGKTQTSNVTNKNDPKSINSRVFIGNLNTAIVKKVDIEAIFSKYGKIVGCSVHKGYAFV
:::::: ::.:.::::::::::: .::: :.::::::::::.:::::::.:::
CCDS76 MASNVTNKMDPHSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIAGCSVHKGFAFV
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 QYMSERHARAAVAGENARVIAGQPLDINMAGEPKPYRPKPGNKRPLSALYRLESKEPFLS
:: .:..::::::::..:.::.: .:::.:.::: : . : :: . .:
CCDS76 QYDKEKNARAAVAGEDGRMIASQVVDINLAAEPKVNRGNAGVKRSAAEMY----------
60 70 80 90 100
130 140 150 160 170
pF1KE5 VGGYVFDYDY-YRDDFYNRLFDYHGRVPPPPR---AVIPLKRPRVAVTTTRRGKGVFSMK
: :: :: . :.:. .... .:::::: ::.: :: :.. .:.::::. :. :
CCDS76 --GSSFDLDYNLQRDYYGGMYSFPARVPPPPPIALAVVPSKRQRISGNTSRRGKSGFNSK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE5 GGSRSTASGSTGSKLKSDELQTIKKELTQIKTKIDSLLGRLEKIEKQQ-KAEAEAQKKQL
.:.:.. : ..:::.:.::.::.:::::: :.:::: ::::::.. : .:... .
CCDS76 SGKRGS---SKSGKLKGDDLQAIKQELTQIKQKVDSLLENLEKIEKEHCKQGVEVKNAKS
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE5 EESLVLIQEECVSEIADHSTEEPAEGGPDADGEEMTDGIEEDFDEDGGHELFLQIK
:: : :. .. .::: : :. : : . .: .:: : . . ::
CCDS76 EEE----QTSSSSKKDKTHVKMESEGGAD-DSVEEGDLLCDDDNEDQGDNQLELIKDDEK
230 240 250 260 270
CCDS76 GAEEGEDDRDRANGQDDS
280 290
291 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 07:30:12 2016 done: Tue Nov 8 07:30:12 2016
Total Scan time: 2.630 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]