(Circular) (Six-base) MAPSORT of: pFN21AE5414.seq Check: 478 from: 1 to: 5752 pFN21AE5414 5752 bp With 182 enzymes: SgfI * January 30, 2014 17:19 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3562 278 Size: 53 83 186 936 2026 2468 Fragments arranged by size: 2468 2026 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2352 3095 1937 Size: 415 743 4594 Fragments arranged by size: 4594 743 415 Acc65I G'GTAC_C Cuts at: 3073 3073 Size: 5752 AclI AA'CG_TT Cuts at: 1563 3879 4252 1563 Size: 2316 373 3063 Fragments arranged by size: 3063 2316 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2063 2857 2945 3815 5199 5467 1632 Size: 431 794 88 870 1384 268 1917 Fragments arranged by size: 1917 1384 870 794 431 268 88 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5555 AflIII A'CryG_T Cuts at: 1203 2515 4651 5628 1203 Size: 1312 2136 977 1327 Fragments arranged by size: 2136 1327 1312 977 AgeI A'CCGG_T Cuts at: 4583 4583 Size: 5752 AhdI GACnn_n'nnGTC Cuts at: 4481 4481 Size: 5752 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5752 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5752 AlwNI CAG_nnn'CTG Cuts at: 2096 3495 5067 2096 Size: 1399 1572 2781 Fragments arranged by size: 2781 1572 1399 ApaLI G'TGCA_C Cuts at: 3809 4965 3809 Size: 1156 4596 ApoI r'AATT_y Cuts at: 1493 2396 2916 3041 3061 3287 3439 5548 1493 Size: 903 520 125 20 226 152 2109 1697 Fragments arranged by size: 2109 1697 903 520 226 152 125 20 AseI AT'TA_AT Cuts at: 160 1032 2598 4306 160 Size: 872 1566 1708 1606 Fragments arranged by size: 1708 1606 1566 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5752 AvaI C'yCGr_G Cuts at: 1870 1943 3015 3077 1870 Size: 73 1072 62 4545 Fragments arranged by size: 4545 1072 73 62 BamHI G'GATC_C Cuts at: 3082 3449 3082 Size: 367 5385 BanI G'GyrC_C Cuts at: 618 943 1160 1787 3073 4528 618 Size: 325 217 627 1286 1455 1842 Fragments arranged by size: 1842 1455 1286 627 325 217 BanII G_rGCy'C Cuts at: 1391 3071 1391 Size: 1680 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2678 928 Size: 971 779 4002 Fragments arranged by size: 4002 971 779 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3943 3977 1903 Size: 34 2006 34 3678 Fragments arranged by size: 3678 2006 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3019 3644 4854 3019 Size: 625 1210 3917 Fragments arranged by size: 3917 1210 625 BclI T'GATC_A Cuts at: 1548 1548 Size: 5752 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4363 136 Size: 107 122 71 631 605 2691 1525 Fragments arranged by size: 2691 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5747 5747 Size: 5752 BlpI GC'TnA_GC Cuts at: 3169 3169 Size: 5752 Bme1580I G_kGCm'C Cuts at: 1790 3813 4969 1790 Size: 2023 1156 2573 Fragments arranged by size: 2573 2023 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5752 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3483 4441 442 Size: 416 53 83 399 24 2066 958 1753 Fragments arranged by size: 2066 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5752 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4412 1239 Size: 3173 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3877 4742 5040 3877 Size: 865 298 4589 Fragments arranged by size: 4589 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2961 4415 882 Size: 617 1462 1454 2219 Fragments arranged by size: 2219 1462 1454 617 BsaAI yAC'GTr Cuts at: 493 1204 3543 493 Size: 711 2339 2702 Fragments arranged by size: 2702 2339 711 BsaBI GATnn'nnATC Cuts at: 2438 5746 2438 Size: 3308 2444 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3559 3941 4576 275 Size: 53 83 186 936 2026 382 635 1451 Fragments arranged by size: 2026 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4185 4583 4857 5004 5415 4185 Size: 398 274 147 411 4522 Fragments arranged by size: 4522 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5527 Fragments arranged by size: 5527 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5752 BseYI C'CCAG_C Cuts at: 2096 2767 4955 5451 2096 Size: 671 2188 496 2397 Fragments arranged by size: 2397 2188 671 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5179 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3202 3963 4991 1540 Size: 275 186 1201 761 1028 2301 Fragments arranged by size: 2301 1201 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3813 3898 4969 3813 Size: 85 1071 4596 Fragments arranged by size: 4596 1071 85 BsmI GAATG_Cn' Cuts at: 3263 3356 3263 Size: 93 5659 Bsp1286I G_dGCh'C Cuts at: 1391 1790 3071 3813 3898 4969 1391 Size: 399 1281 742 85 1071 2174 Fragments arranged by size: 2174 1281 1071 742 399 85 BspEI T'CCGG_A Cuts at: 5415 5415 Size: 5752 BspHI T'CATG_A Cuts at: 3641 5371 3641 Size: 1730 4022 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2824 3107 844 Size: 1980 283 3489 Fragments arranged by size: 3489 1980 283 BsrBI CCG'CTC Cuts at: 1394 1823 2028 3639 1394 Size: 429 205 1611 3507 Fragments arranged by size: 3507 1611 429 205 BsrDI GCAATG_nn' Cuts at: 65 1248 4247 4421 65 Size: 1183 2999 174 1396 Fragments arranged by size: 2999 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4396 4583 1700 Size: 110 2586 187 2869 Fragments arranged by size: 2869 2586 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5752 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5752 BssSI C'ACGA_G Cuts at: 3812 4824 3812 Size: 1012 4740 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5752 BstBI TT'CG_AA Cuts at: 4556 4556 Size: 5752 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5752 BstYI r'GATC_y Cuts at: 1972 3082 3449 3834 3851 5303 5389 5401 5747 Size: 1110 367 385 17 1452 86 12 346 Cuts at: 5747 1972 Size: 1977 Fragments arranged by size: 1977 1452 1110 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4261 Fragments arranged by size: 4261 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2551 487 Size: 683 56 1325 3688 Fragments arranged by size: 3688 1325 683 56 BtsI GCAGTG_nn' Cuts at: 2683 3268 4062 4082 2683 Size: 585 794 20 4353 Fragments arranged by size: 4353 794 585 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5752 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5717 DraI TTT'AAA Cuts at: 2668 3056 2668 Size: 388 5364 DraIII CAC_nnn'GTG Cuts at: 2211 2211 Size: 5752 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4759 809 Size: 507 3443 1802 Fragments arranged by size: 3443 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3199 4088 5717 Size: 54 1425 50 275 18 1369 889 1629 Cuts at: 5717 8 Size: 43 Fragments arranged by size: 1629 1425 1369 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3199 1537 Size: 275 1387 4090 Fragments arranged by size: 4090 1387 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2361 2524 2701 2964 3682 1353 Size: 1008 163 177 263 718 3423 Fragments arranged by size: 3423 1008 718 263 177 163 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2139 4339 4713 4859 387 Size: 1064 138 550 2200 374 146 1280 Fragments arranged by size: 2200 1280 1064 550 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2063 2857 2945 3815 4412 5199 5467 Size: 393 431 794 88 870 597 787 268 Cuts at: 5467 1239 Size: 1524 Fragments arranged by size: 1524 870 794 787 597 431 393 268 88 EcoO109I rG'GnC_Cy Cuts at: 2716 2716 Size: 5752 EcoRI G'AATT_C Cuts at: 2916 3061 3439 2916 Size: 145 378 5229 Fragments arranged by size: 5229 378 145 FspI TGC'GCA Cuts at: 4258 4258 Size: 5752 HaeII r_GCGC'y Cuts at: 1678 2097 4899 1678 Size: 419 2802 2531 Fragments arranged by size: 2802 2531 419 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4393 4425 4467 4499 1373 Size: 32 135 32 2821 32 42 32 2626 Fragments arranged by size: 2821 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3096 3342 669 Size: 988 281 1158 246 3079 Fragments arranged by size: 3079 1158 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5752 HpaI GTT'AAC Cuts at: 3342 3342 Size: 5752 KpnI G_GTAC'C Cuts at: 3077 3077 Size: 5752 MfeI C'AATT_G Cuts at: 2778 3351 2778 Size: 573 5179 MluI A'CGCG_T Cuts at: 5628 5628 Size: 5752 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2149 4866 5050 1305 Size: 844 2717 184 2007 Fragments arranged by size: 2717 2007 844 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3930 Fragments arranged by size: 3930 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3710 4069 4228 518 Size: 648 2544 359 159 2042 Fragments arranged by size: 2544 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2037 2066 2188 2227 3168 3845 4993 5238 Size: 431 29 122 39 941 677 1148 245 Cuts at: 5238 1606 Size: 2120 Fragments arranged by size: 2120 1148 941 677 431 245 122 39 29 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4261 Fragments arranged by size: 4261 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5752 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5752 NotI GC'GGCC_GC Cuts at: 3199 3199 Size: 5752 NspI r_CATG'y Cuts at: 1132 1229 2519 3110 4655 1132 Size: 97 1290 591 1545 2229 Fragments arranged by size: 2229 1545 1290 591 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5752 PciI A'CATG_T Cuts at: 2515 4651 2515 Size: 2136 3616 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5752 PmeI GTTT'AAAC Cuts at: 3056 3056 Size: 5752 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3821 3853 5334 5366 3821 Size: 32 1481 32 4207 Fragments arranged by size: 4207 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2716 2716 Size: 5752 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5752 PsiI TTA'TAA Cuts at: 3322 3322 Size: 5752 PstI C_TGCA'G Cuts at: 830 2092 3104 830 Size: 1262 1012 3478 Fragments arranged by size: 3478 1262 1012 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5752 SalI G'TCGA_C Cuts at: 1936 3094 1936 Size: 1158 4594 SbfI CC_TGCA'GG Cuts at: 3104 3104 Size: 5752 ScaI AGT'ACT Cuts at: 4000 5712 4000 Size: 1712 4040 SfcI C'TryA_G Cuts at: 826 1045 2088 2388 3100 4235 4916 5107 826 Size: 219 1043 300 712 1135 681 191 1471 Fragments arranged by size: 1471 1135 1043 712 681 300 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5752 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5752 SmaI CCC'GGG Cuts at: 1872 3017 3079 1872 Size: 1145 62 4545 Fragments arranged by size: 4545 1145 62 SmlI C'TyrA_G Cuts at: 820 1017 1943 3856 4757 5019 820 Size: 197 926 1913 901 262 1553 Fragments arranged by size: 1913 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3543 493 Size: 3050 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5752 SphI G_CATG'C Cuts at: 1132 3110 1132 Size: 1978 3774 SspI AAT'ATT Cuts at: 5 52 3676 5 Size: 47 3624 2081 Fragments arranged by size: 3624 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5752 StyI C'CwwG_G Cuts at: 513 1065 2004 3191 513 Size: 552 939 1187 3074 Fragments arranged by size: 3074 1187 939 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3779 3796 3949 4134 4579 325 Size: 1255 2199 17 153 185 445 1498 Fragments arranged by size: 2199 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3998 5710 96 Size: 274 80 33 51 1443 2021 1712 138 Fragments arranged by size: 2021 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5712 5744 5712 Size: 32 5720 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5752 XbaI T'CTAG_A Cuts at: 3088 3088 Size: 5752 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5752 XmaI C'CCGG_G Cuts at: 1870 3015 3077 1870 Size: 1145 62 4545 Fragments arranged by size: 4545 1145 62 XmnI GAAnn'nnTTC Cuts at: 2076 2742 3881 2076 Size: 666 1139 3947 Fragments arranged by size: 3947 1139 666 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3560 276 Size: 53 83 186 936 2026 2468 Fragments arranged by size: 2468 2026 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI