FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5414, 349 aa 1>>>pF1KE5414 349 - 349 aa - 349 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6998+/-0.000755; mu= 16.2396+/- 0.046 mean_var=97.4329+/-19.048, 0's: 0 Z-trim(110.8): 9 B-trim: 9 in 1/53 Lambda= 0.129934 statistics sampled from 11885 (11887) to 11885 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.365), width: 16 Scan time: 2.950 The best scores are: opt bits E(32554) CCDS695.1 RPF1 gene_id:80135|Hs108|chr1 ( 349) 2326 445.9 2.3e-125 CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2 ( 291) 467 97.4 1.6e-20 >>CCDS695.1 RPF1 gene_id:80135|Hs108|chr1 (349 aa) initn: 2326 init1: 2326 opt: 2326 Z-score: 2364.0 bits: 445.9 E(32554): 2.3e-125 Smith-Waterman score: 2326; 99.7% identity (100.0% similar) in 349 aa overlap (1-349:1-349) 10 20 30 40 50 60 pF1KE5 MAKAGDKSGSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNK ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 MAKAGDKSSSSGKKSLKRKAAAEELQEAAGAGDGATENGVQPPKAAAFPPGFSISEIKNK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 QRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 QRRHLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDNQRVYDETTVDPND 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 EEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLAL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 KKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 EHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSE 250 260 270 280 290 300 310 320 330 340 pF1KE5 KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS69 KKVGIQELGPRFTLKLRSLQKGTFDSKYGEYEWVHKPREMDTSRRKFHL 310 320 330 340 >>CCDS2160.1 IMP4 gene_id:92856|Hs108|chr2 (291 aa) initn: 440 init1: 233 opt: 467 Z-score: 481.8 bits: 97.4 E(32554): 1.6e-20 Smith-Waterman score: 467; 30.4% identity (63.1% similar) in 293 aa overlap (60-349:7-288) 30 40 50 60 70 80 pF1KE5 GAGDGATENGVQPPKAAAFPPGFSISEIKNKQRRHLMFTRWKQQQRKEKLAAKKKLKKER . ::. .. . ... .. .:... .. : CCDS21 MLRREARLRREYLYRKAREEAQR---SAQERKERLR 10 20 30 90 100 110 120 130 140 pF1KE5 EALGDKAPPKPVPKTIDNQRVYDETTVDPNDE--EVAYDEATDEFASYFNKQTSPKILIT .:: .. . .: . . . . ... .: : . ... ::. . .::..:: CCDS21 RALEEN---RLIPTELRREALALQGSLEFDDAGGEGVTSHVDDEY--RWAGVEDPKVMIT 40 50 60 70 80 150 160 170 180 190 200 pF1KE5 TSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNG :: : .: . ..:. :.:... . : . .. : : :::.:..: : :: : CCDS21 TSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVRACKANGVTDLLVVHEHRGTPVG 90 100 110 120 130 140 210 220 230 240 250 260 pF1KE5 LILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLF ::.:::: ::::.: . .: .:..: : .: :..: ..:..:::. .. .. :: CCDS21 LIVSHLPFGPTAYFTLCNVVMRHDIPDLGT-MSEAKPHLITHGFSSRLGKRVSDILRYLF 150 160 170 180 190 200 270 280 290 300 310 320 pF1KE5 PHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVGIQELGPRFTLKLRSLQKGTFDSK : :. ...: :: :: ::: :: : : ....: . :.:::: ::: .. ::.... CCDS21 P-VPKDDSHRVITFANQDDYISFRHHVYKKTDHRNVELTEVGPRFELKLYMIRLGTLEQE 210 220 230 240 250 260 330 340 pF1KE5 Y-GEYEWVHKPREMDTSRRKFHL .. :: .: .:.:.. : CCDS21 ATADVEWRWHPYT-NTARKRVFLSTE 270 280 290 349 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 00:30:59 2016 done: Tue Nov 8 00:30:59 2016 Total Scan time: 2.950 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]