FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5253, 199 aa 1>>>pF1KE5253 199 - 199 aa - 199 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1885+/-0.00105; mu= 10.3097+/- 0.064 mean_var=92.7865+/-17.902, 0's: 0 Z-trim(105.1): 28 B-trim: 37 in 1/51 Lambda= 0.133147 statistics sampled from 8234 (8245) to 8234 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.253), width: 16 Scan time: 1.960 The best scores are: opt bits E(32554) CCDS54180.1 CHMP1B gene_id:57132|Hs108|chr18 ( 199) 1228 245.7 1.4e-65 CCDS45552.1 CHMP1A gene_id:5119|Hs108|chr16 ( 196) 682 140.8 5.2e-34 CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 ( 222) 296 66.7 1.2e-11 >>CCDS54180.1 CHMP1B gene_id:57132|Hs108|chr18 (199 aa) initn: 1228 init1: 1228 opt: 1228 Z-score: 1290.8 bits: 245.7 E(32554): 1.4e-65 Smith-Waterman score: 1228; 100.0% identity (100.0% similar) in 199 aa overlap (1-199:1-199) 10 20 30 40 50 60 pF1KE5 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 QAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 QAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEH 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 QFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS54 QFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMELPQGQTGSVGTSV 130 140 150 160 170 180 190 pF1KE5 ASAEQDELSQRLARLRDQV ::::::::::::::::::: CCDS54 ASAEQDELSQRLARLRDQV 190 >>CCDS45552.1 CHMP1A gene_id:5119|Hs108|chr16 (196 aa) initn: 723 init1: 609 opt: 682 Z-score: 724.1 bits: 140.8 E(32554): 5.2e-34 Smith-Waterman score: 682; 55.8% identity (85.3% similar) in 197 aa overlap (4-197:1-196) 10 20 30 40 50 60 pF1KE5 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVARIHAENAIRQKN :. ::.:::.::.: . ::: .:. :::.::.:::. . :.: ::..::::::.:: CCDS45 MDDTLFQLKFTAKQLEKLAKKAEKDSKAEQAKVKKALLQKNVECARVYAENAIRKKN 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 QAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLEKISALMDKFEH ..::.:::..::::::..::::::: :::.:: :.:..: .:.::.:.:.:..::.::. CCDS45 EGVNWLRMASRVDAVASKVQTAVTMKGVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQ 60 70 80 90 100 110 130 140 150 160 170 pF1KE5 QFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL---DLNMELPQGQTGSVG : ..:::.:. :::.:::.:::::::.::: :....:.: :: : .::.: . .:: CCDS45 QVQNLDVHTSVMEDSMSSATTLTTPQEQVDSLIMQIAEENGLEVLDQLSQLPEGAS-AVG 120 130 140 150 160 170 180 190 pF1KE5 TSVASAEQDELSQRLARLRDQV : . ...:.::.::: ::. CCDS45 ESSVRSQEDQLSRRLAALRN 180 190 >>CCDS12986.1 CHMP2A gene_id:27243|Hs108|chr19 (222 aa) initn: 342 init1: 287 opt: 296 Z-score: 322.6 bits: 66.7 E(32554): 1.2e-11 Smith-Waterman score: 299; 30.7% identity (66.3% similar) in 199 aa overlap (11-196:22-220) 10 20 30 40 pF1KE5 MSNMEKHLFNLKFAAKELSRSAKKCDKEEKAEKAKIKKAIQKGNMEVAR :. : .::.: .: . .:: : ::: ..:.:...: CCDS12 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVR 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE5 IHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDATLKTMNLE : :.. .: . . .:. : : ..::. ..:: . ......: ::.:.: . . ..: CCDS12 IMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLP 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE5 KISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGLDLNMEL- .:. .: .::.: : .:.. ..:.:..... ... : ..... :: ::.:. :: CCDS12 QIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELS 130 140 150 160 170 180 170 180 190 pF1KE5 --PQ-GQTGSVGT------SVASAEQD---ELSQRLARLRDQV :. : . ::.. ..::: : .: .:: :: CCDS12 NLPSTGGSLSVAAGGKKAEAAASALADADADLEERLKNLRRD 190 200 210 220 199 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:54:11 2016 done: Mon Nov 7 22:54:11 2016 Total Scan time: 1.960 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]