FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3037, 169 aa 1>>>pF1KE3037 169 - 169 aa - 169 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3332+/-0.000735; mu= 11.7809+/- 0.044 mean_var=58.6373+/-11.606, 0's: 0 Z-trim(108.1): 15 B-trim: 0 in 0/50 Lambda= 0.167489 statistics sampled from 10009 (10017) to 10009 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.308), width: 16 Scan time: 1.950 The best scores are: opt bits E(32554) CCDS5241.1 VIP gene_id:7432|Hs108|chr6 ( 169) 1089 271.0 2.4e-73 CCDS5240.1 VIP gene_id:7432|Hs108|chr6 ( 170) 1077 268.1 1.8e-72 >>CCDS5241.1 VIP gene_id:7432|Hs108|chr6 (169 aa) initn: 1089 init1: 1089 opt: 1089 Z-score: 1430.2 bits: 271.0 E(32554): 2.4e-73 Smith-Waterman score: 1089; 100.0% identity (100.0% similar) in 169 aa overlap (1-169:1-169) 10 20 30 40 50 60 pF1KE3 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSNISEDPVP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSNISEDPVP 70 80 90 100 110 120 130 140 150 160 pF1KE3 VKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 VKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK 130 140 150 160 >>CCDS5240.1 VIP gene_id:7432|Hs108|chr6 (170 aa) initn: 835 init1: 718 opt: 1077 Z-score: 1414.5 bits: 268.1 E(32554): 1.8e-72 Smith-Waterman score: 1077; 99.4% identity (99.4% similar) in 170 aa overlap (1-169:1-170) 10 20 30 40 50 60 pF1KE3 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 MDTRNKAQLLVLLTLLSVLFSQTSAWPLYRAPSALRLGDRIPFEGANEPDQVSLKEDIDM 10 20 30 40 50 60 70 80 90 100 110 pF1KE3 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVS-NISEDPV :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: CCDS52 LQNALAENDTPYYDVSRNARHADGVFTSDFSKLLGQLSAKKYLESLMGKRVSSNISEDPV 70 80 90 100 110 120 120 130 140 150 160 pF1KE3 PVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS52 PVKRHSDAVFTDNYTRLRKQMAVKKYLNSILNGKRSSEGESPDFPEELEK 130 140 150 160 170 169 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 04:56:17 2016 done: Sun Nov 6 04:56:17 2016 Total Scan time: 1.950 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]