FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7977, 305 aa 1>>>pF1KB7977 305 - 305 aa - 305 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.9894+/-0.000369; mu= 9.6273+/- 0.023 mean_var=159.0454+/-32.230, 0's: 0 Z-trim(118.7): 229 B-trim: 1552 in 1/55 Lambda= 0.101698 statistics sampled from 31577 (31862) to 31577 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.374), width: 16 Scan time: 8.100 The best scores are: opt bits E(85289) NP_079141 (OMIM: 607937) homeobox protein NANOG is ( 305) 2130 324.0 2.3e-88 XP_011519152 (OMIM: 607937) PREDICTED: homeobox pr ( 304) 2112 321.4 1.5e-87 XP_011519154 (OMIM: 607937) PREDICTED: homeobox pr ( 181) 1294 201.1 1.4e-51 NP_001284627 (OMIM: 607937) homeobox protein NANOG ( 289) 1266 197.2 3.2e-50 XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 48.2 3.6e-05 NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 249 48.2 3.6e-05 XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 48.2 3.6e-05 XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 48.2 3.6e-05 XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 48.2 3.6e-05 XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 48.2 3.6e-05 NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 249 48.2 3.6e-05 NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 243 47.2 5.4e-05 NP_005213 (OMIM: 600030) homeobox protein DLX-6 [H ( 293) 236 46.1 0.0001 NP_004396 (OMIM: 126255) homeobox protein DLX-2 [H ( 328) 235 46.0 0.00012 NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 232 45.5 0.00015 NP_835221 (OMIM: 600029) homeobox protein DLX-1 is ( 255) 230 45.2 0.00017 XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 226 44.4 0.00018 XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 226 44.4 0.00018 XP_016879780 (OMIM: 601911,616788) PREDICTED: home ( 168) 224 44.1 0.00023 NP_001925 (OMIM: 601911,616788) homeobox protein D ( 168) 224 44.1 0.00023 NP_612138 (OMIM: 601911,616788) homeobox protein D ( 240) 226 44.5 0.00024 NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 227 44.8 0.00025 NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 224 44.3 0.00034 NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 220 43.6 0.00044 XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 218 43.4 0.00054 NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 218 43.4 0.00061 NP_005512 (OMIM: 186770) T-cell leukemia homeobox ( 330) 219 43.6 0.00062 XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 219 43.7 0.00064 XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 217 43.4 0.00081 NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 217 43.4 0.00081 XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 217 43.5 0.00093 XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 217 43.5 0.00093 XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 217 43.5 0.00093 NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 217 43.5 0.00093 XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 217 43.5 0.00093 XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 217 43.5 0.00093 NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 213 42.7 0.0011 NP_002440 (OMIM: 123101,168500,168550,604757) home ( 267) 212 42.5 0.0011 XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 215 43.2 0.0011 XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 217 43.6 0.0011 XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 213 42.9 0.0015 NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 211 42.5 0.0016 NP_055283 (OMIM: 607158) homeobox protein VENTX [H ( 258) 208 41.9 0.0016 >>NP_079141 (OMIM: 607937) homeobox protein NANOG isofor (305 aa) initn: 2130 init1: 2130 opt: 2130 Z-score: 1707.3 bits: 324.0 E(85289): 2.3e-88 Smith-Waterman score: 2130; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305) 10 20 30 40 50 60 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_079 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 250 260 270 280 290 300 pF1KB7 QPEDV ::::: NP_079 QPEDV >>XP_011519152 (OMIM: 607937) PREDICTED: homeobox protei (304 aa) initn: 1458 init1: 1137 opt: 2112 Z-score: 1693.0 bits: 321.4 E(85289): 1.5e-87 Smith-Waterman score: 2112; 99.7% identity (99.7% similar) in 305 aa overlap (1-305:1-304) 10 20 30 40 50 60 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: XP_011 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQ-ASAPTYPSLYSS 130 140 150 160 170 190 200 210 220 230 240 pF1KB7 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB7 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 240 250 260 270 280 290 pF1KB7 QPEDV ::::: XP_011 QPEDV 300 >>XP_011519154 (OMIM: 607937) PREDICTED: homeobox protei (181 aa) initn: 1294 init1: 1294 opt: 1294 Z-score: 1047.3 bits: 201.1 E(85289): 1.4e-51 Smith-Waterman score: 1294; 100.0% identity (100.0% similar) in 181 aa overlap (125-305:1-181) 100 110 120 130 140 150 pF1KB7 KQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ :::::::::::::::::::::::::::::: XP_011 MQELSNILNLSYKQVKTWFQNQRMKSKRWQ 10 20 30 160 170 180 190 200 210 pF1KB7 KNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KNNWPKNSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQ 40 50 60 70 80 90 220 230 240 250 260 270 pF1KB7 SWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGL 100 110 120 130 140 150 280 290 300 pF1KB7 NVIQQTTRYFSTPQTMDLFLNYSMNMQPEDV ::::::::::::::::::::::::::::::: XP_011 NVIQQTTRYFSTPQTMDLFLNYSMNMQPEDV 160 170 180 >>NP_001284627 (OMIM: 607937) homeobox protein NANOG iso (289 aa) initn: 1457 init1: 1136 opt: 1266 Z-score: 1022.5 bits: 197.2 E(85289): 3.2e-50 Smith-Waterman score: 1981; 94.8% identity (94.8% similar) in 305 aa overlap (1-305:1-289) 10 20 30 40 50 60 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS ::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQ------------- 130 140 150 160 190 200 210 220 230 240 pF1KB7 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ---GCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB7 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM 230 240 250 260 270 280 pF1KB7 QPEDV ::::: NP_001 QPEDV >>XP_005249787 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 181 init1: 181 opt: 249 Z-score: 213.7 bits: 48.2 E(85289): 3.6e-05 Smith-Waterman score: 249; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291) 10 20 30 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN : :: : : ..: : : XP_005 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA 80 90 100 110 120 40 50 60 70 80 90 pF1KB7 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAEKSVAKKE-DKVP : . :. : . . ::: .: . : : . : .. :: ::. .: . :: : XP_005 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP 130 140 150 160 170 180 100 110 120 130 140 pF1KB7 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK ......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.::: XP_005 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 190 200 210 220 230 240 150 160 170 180 190 200 pF1KB7 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW :. ::.. .:.: . . .:. :. .:.:. ::: . : XP_005 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG 250 260 270 280 290 300 210 220 230 240 250 260 pF1KB7 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAA XP_005 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS 310 320 330 340 350 360 >>NP_705895 (OMIM: 142954) homeobox protein Hox-A3 isofo (443 aa) initn: 181 init1: 181 opt: 249 Z-score: 213.7 bits: 48.2 E(85289): 3.6e-05 Smith-Waterman score: 249; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291) 10 20 30 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN : :: : : ..: : : NP_705 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA 80 90 100 110 120 40 50 60 70 80 90 pF1KB7 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAEKSVAKKE-DKVP : . :. : . . ::: .: . : : . : .. :: ::. .: . :: : NP_705 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP 130 140 150 160 170 180 100 110 120 130 140 pF1KB7 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK ......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.::: NP_705 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 190 200 210 220 230 240 150 160 170 180 190 200 pF1KB7 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW :. ::.. .:.: . . .:. :. .:.:. ::: . : NP_705 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG 250 260 270 280 290 300 210 220 230 240 250 260 pF1KB7 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAA NP_705 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS 310 320 330 340 350 360 >>XP_011513645 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 181 init1: 181 opt: 249 Z-score: 213.7 bits: 48.2 E(85289): 3.6e-05 Smith-Waterman score: 249; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291) 10 20 30 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN : :: : : ..: : : XP_011 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA 80 90 100 110 120 40 50 60 70 80 90 pF1KB7 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAEKSVAKKE-DKVP : . :. : . . ::: .: . : : . : .. :: ::. .: . :: : XP_011 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP 130 140 150 160 170 180 100 110 120 130 140 pF1KB7 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK ......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.::: XP_011 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 190 200 210 220 230 240 150 160 170 180 190 200 pF1KB7 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW :. ::.. .:.: . . .:. :. .:.:. ::: . : XP_011 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG 250 260 270 280 290 300 210 220 230 240 250 260 pF1KB7 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAA XP_011 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS 310 320 330 340 350 360 >>XP_005249788 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 181 init1: 181 opt: 249 Z-score: 213.7 bits: 48.2 E(85289): 3.6e-05 Smith-Waterman score: 249; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291) 10 20 30 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN : :: : : ..: : : XP_005 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA 80 90 100 110 120 40 50 60 70 80 90 pF1KB7 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAEKSVAKKE-DKVP : . :. : . . ::: .: . : : . : .. :: ::. .: . :: : XP_005 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP 130 140 150 160 170 180 100 110 120 130 140 pF1KB7 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK ......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.::: XP_005 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 190 200 210 220 230 240 150 160 170 180 190 200 pF1KB7 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW :. ::.. .:.: . . .:. :. .:.:. ::: . : XP_005 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG 250 260 270 280 290 300 210 220 230 240 250 260 pF1KB7 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAA XP_005 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS 310 320 330 340 350 360 >>XP_006715778 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 181 init1: 181 opt: 249 Z-score: 213.7 bits: 48.2 E(85289): 3.6e-05 Smith-Waterman score: 249; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291) 10 20 30 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN : :: : : ..: : : XP_006 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA 80 90 100 110 120 40 50 60 70 80 90 pF1KB7 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAEKSVAKKE-DKVP : . :. : . . ::: .: . : : . : .. :: ::. .: . :: : XP_006 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP 130 140 150 160 170 180 100 110 120 130 140 pF1KB7 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK ......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.::: XP_006 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 190 200 210 220 230 240 150 160 170 180 190 200 pF1KB7 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW :. ::.. .:.: . . .:. :. .:.:. ::: . : XP_006 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG 250 260 270 280 290 300 210 220 230 240 250 260 pF1KB7 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAA XP_006 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS 310 320 330 340 350 360 >>XP_005249789 (OMIM: 142954) PREDICTED: homeobox protei (443 aa) initn: 181 init1: 181 opt: 249 Z-score: 213.7 bits: 48.2 E(85289): 3.6e-05 Smith-Waterman score: 249; 31.3% identity (57.1% similar) in 198 aa overlap (5-194:102-291) 10 20 30 pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEEN : :: : : ..: : : XP_005 LRTLSAPPSQPPSLGEPPLHPPPPQAAPPAPQPPQPAPQPPAPT--PAAPPP----PSSA 80 90 100 110 120 40 50 60 70 80 90 pF1KB7 YPSLQMSSAEMPHTETVSPLPSSMDLLIQDSPDSSTSPKG-KQPTSAEKSVAKKE-DKVP : . :. : . . ::: .: . : : . : .. :: ::. .: . :: : XP_005 SPPQNASNNPTPANAAKSPLLNSPTVAKQIFPWMKESRQNTKQKTSSSSSGESCAGDKSP 130 140 150 160 170 180 100 110 120 130 140 pF1KB7 ---VKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMK ......::...:.:: :. .:. ..:: . :..:.:::. .:.: ::::.::: XP_005 PGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMK 190 200 210 220 230 240 150 160 170 180 190 200 pF1KB7 SKRWQKNNWPKNSNGVTQKASAPTYPS---LYSSYHQGCLVNPTGNLPMWSNQTWNNSTW :. ::.. .:.: . . .:. :. .:.:. ::: . : XP_005 YKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHS--LVNSVPYEPQSPPPFSKPPQG 250 260 270 280 290 300 210 220 230 240 250 260 pF1KB7 SNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAA XP_005 TYGLPPASYPASLPSCAPPPPPQKRYTAAGAGAGGTPDYDPHAHGLQGNGSYGTPHIQGS 310 320 330 340 350 360 305 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 19:53:58 2016 done: Sun Nov 6 19:54:00 2016 Total Scan time: 8.100 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]